Ostrea edulis (European flat oyster): 125659709
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Entry
125659709 CDS
T09123
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like isoform X1
KO
K18735
protein SMG9
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125659709
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
125659709
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
AAA_18
Motif
Other DBs
NCBI-GeneID:
125659709
NCBI-ProteinID:
XP_048747434
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All DBs
Position
1:33069198..33083934
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AA seq
460 aa
AA seq
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MSEQDRGDRGRRRPRRRGGGPNSGSRKIERETYDGDYQSSKPTIILAKPAAMDSSVLSTS
PSATSSTIKPDKPVVMAIRPRDESFSSGASSISAGESTPSQVPSVSHRTPVSIIQTDGSS
RLSAPPEMNQSVKIVDDSHQWSDAGMEVLLDQTDFFVVGVLGLQGSGKSTMLSLLAGNNP
SDNIRQYIFPPQNRECKELCEHQTSGINMFVTGERTIFLDTQPVLSPSVLDKIIRQEKKI
PPEYSTAENCVEMQSLHQAAFLMSVCHIILVVQDWFSDINLIRFLQTAEMLKPSTPSSSH
DSSSGSEETNDYYPRIVFVQNKCTRDHFSRETHKAMQSTLSKMLEVSKLKIKGDVSMASG
NLLSGLPKHQPTDINLYLFPNMDTNKKESQDTVLTLLPEYRGYPSVTTLVNGLRKQIYSM
PRDALTHTTLSEKNWFHYAARTWEAVKKSQLMAEYNRLLH
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagcaggatcgaggagatcgtggtcgaagacgaccgagaagaaggggaggcggt
ccaaacagtggcagtagaaagattgaaagggagacatatgacggggactaccaatcatca
aagccaactattattttggccaaacctgctgctatggactcgagtgtcctgagtaccagt
ccatcagcaacttcctctacaatcaagccagacaaacccgttgtcatggcaataagaccc
agagatgagtcattctcctcgggagcatccagtatatcagcaggggagtcaactccatca
caagtcccatcagtttcacaccgaaccccagtcagcattatccagacagatgggtccagc
cgtctctctgctcctccagaaatgaaccagagtgttaaaattgtggatgactctcatcaa
tggagtgatgcaggaatggaagttttactggatcaaactgatttctttgtggttggggtc
cttgggcttcaaggctctggaaagtctaccatgttgtcactcctagcgggaaacaatccc
tcagacaatataagacagtatatatttccaccacaaaacagagagtgtaaagagttatgt
gaacaccagacctcgggaattaatatgtttgtcacaggagaaagaacgatatttctggat
actcagcctgtcttgagtccctctgttctggataaaataattcgtcaagagaagaagatc
cccccagaatacagcactgccgaaaactgtgtggaaatgcagtccctgcaccaggcagca
tttctgatgtctgtctgtcacatcatcttagtggttcaggactggttctcagacatcaat
ctcatcagatttctacagacggctgagatgttgaaaccttcaactccatcatcaagtcat
gacagttcctctggatcggaagaaactaatgattactaccctagaattgtttttgtacag
aataaatgcaccagggatcattttagcagagaaacacacaaggccatgcagtcaacactt
tccaagatgttagaggtttcaaagctgaaaatcaaaggtgacgtatcaatggccagtgga
aacctgttgtcagggttaccaaaacatcaaccaacagacatcaacttatatctgtttcca
aatatggacactaacaagaaagaatctcaagatacagttctgaccctattacctgagtac
cgtggataccctagtgtgaccacactggtaaacggtttgaggaagcagatttactccatg
ccaagagatgctctaacccataccactctgtcagagaaaaactggtttcactatgcagct
agaacctgggaggctgtaaagaaatcgcaacttatggctgagtacaacagactgctgcac
tga
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