Ostrea edulis (European flat oyster): 125659842
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Entry
125659842 CDS
T09123
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125659842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125659842
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125659842
mRNA degradation factors
5'-3' decay
Lsm complex
125659842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SPT2_N
SHNi-TPR
Motif
Other DBs
NCBI-GeneID:
125659842
NCBI-ProteinID:
XP_048747589
LinkDB
All DBs
Position
9:4207369..4212380
Genome browser
AA seq
133 aa
AA seq
DB search
MNYLPGTASLVEEIDKKLLVVLRDGRTLIGYLRSIDQFANLVLHRTIERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLENENNPQLEEVPIDDILEMQREEQIQKQQEEERKKKSMLER
GLQPHSELHDDLF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattaccttccaggaacagctagtctggtagaagagatagacaaaaaactacttgtt
gtgcttagagatggaagaacactgataggttacctgagaagtattgaccaatttgccaat
ctagtccttcaccgtactattgaaagaattcatgttggtaagaaatatggagatattcca
agaggaatctttgttgtaagaggagaaaatgttgttctgcttggcgaaatagatctggaa
aatgaaaataaccctcagttagaagaagtaccaatagacgatatattggaaatgcaacgc
gaagaacaaattcagaagcaacaagaggaggagcgcaaaaagaagtccatgctggagcga
ggacttcagcctcactctgaactccatgatgacttgttttag
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