Ostrea edulis (European flat oyster): 125660286
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Entry
125660286 CDS
T09123
Name
(RefSeq) bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125660286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125660286
03400 DNA repair and recombination proteins [BR:
oed03400
]
125660286
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125660286
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
125660286
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
125660286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
DUF7790
Motif
Other DBs
NCBI-GeneID:
125660286
NCBI-ProteinID:
XP_048748065
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All DBs
Position
2:981601..984601
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AA seq
493 aa
AA seq
DB search
MASKFEYSLSEICKQFTIDNLKPEQKEIINALVKKEDCIAILPTGFGKSLPYQILVPFIR
ELKKIASELEEGLQKQVKKHFDNQTIVVCCPLISLMQDQVERLSAIPNLRVVFKGTDPAV
NEQIKTGEINIVFASPETLVGESDWRAQFQTLKVDLIVVDEFHTIATWGGYENEDERAVF
RKWFRHIGELRSMFPSASLLALSATCTIKIRKRVANVLDLREESTIMITKSPNRSNIKLV
LSKTNNTIEDGMYWLISGMETLRHAFPKTLIYANSISDVAKLYTYVVNELPDCAEFVDMF
HSETTEENKKTILNALRDNTSTKRVVFATSALGMGIDIGNCQSVVLYGPPHSVVDLVQEI
GRVGRDGQSSVAIMLYNSYHLRNVNKDIKTLFKSETCRRQVLMGNFLEEPQLTKLKAECN
LHTCCDVCAKLCLCGKCEKLPVEKLLENIECVETCSSSDSNTVNYSDLEASDVNSDSFTS
DCEEMLKACDDTN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaatttgagtatagtctctctgaaatatgtaaacagttcacgatcgacaat
ttgaagcccgagcagaaagaaattataaatgcattggtgaagaaagaagattgtattgca
attttgcccaccggcttcggaaagtcattgccatatcaaattttggtaccctttatccgc
gaactgaaaaagattgcgagtgaacttgaagagggccttcagaaacaagtgaagaaacac
tttgataatcagacaattgtggtttgctgtccattgatatcactgatgcaggaccaagtg
gaacgtctttcagctattccaaatctacgtgttgtgtttaaaggtactgatccagctgta
aatgaacagatcaagaccggagaaataaatattgtgtttgcctcacctgagactttggtt
ggcgaatctgactggagagcccagtttcagacactgaaagttgacttgatagttgttgat
gagttccacactatagcaacatggggaggatatgaaaatgaagatgagagggctgttttc
aggaaatggtttcgccatattggagaattacgatcaatgttcccatcagcatccctactt
gcactaagtgcaacatgcaccataaaaattcgtaaacgtgttgccaatgtactggacttg
cgtgaagagtcgaccattatgataacaaagtctccaaacagaagtaacattaaacttgtg
ctatcaaaaacaaataatacaattgaagatggaatgtactggctgatcagtggaatggaa
actttaagacatgcatttcccaagactttaatttatgctaactctataagtgatgtcgca
aaactgtatacctatgttgttaatgagttacctgactgtgccgagtttgtggatatgttt
cattctgaaacaactgaggaaaacaaaaaaacaattttaaatgctttgcgtgacaatacc
agcacaaagagagtagtgtttgcaacaagtgccctaggcatgggtattgatataggaaat
tgccaaagtgttgttttatatggtccacctcatagtgttgttgatttagttcaggaaatt
ggaagagttgggcgtgatggacagtcatcagttgccatcatgctctacaattcttatcat
ctgagaaatgtgaacaaagacataaaaaccttgtttaaatcagagacttgtaggaggcaa
gtattaatgggtaattttctagaggaaccacaactaactaaactgaaagctgaatgcaat
ctgcatacttgttgtgacgtttgtgccaaattatgcctatgtggaaagtgtgaaaaactg
ccagtggaaaaactgttggaaaatattgagtgtgttgaaacatgcagctcaagtgacagc
aacacagtgaactacagtgatttagaagcaagtgatgtaaacagtgactccttcacaagt
gattgtgaggaaatgttgaaagcttgtgatgatacaaattaa
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