Ostrea edulis (European flat oyster): 125661418
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Entry
125661418 CDS
T09123
Name
(RefSeq) uncharacterized protein LOC125661418
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125661418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125661418
03400 DNA repair and recombination proteins [BR:
oed03400
]
125661418
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125661418
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
125661418
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
125661418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
125661418
NCBI-ProteinID:
XP_048749369
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All DBs
Position
6:complement(32113832..32116740)
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AA seq
446 aa
AA seq
DB search
MEEKALSSVLEKFKFDIKLKEEQQNIIFSILRKMDVFALLPTGFGKSMTYILVPLLADEL
KGGAPSHTALVVSPLKALMKDQVEFLGQHNVSAVALMDDTKSQDVVNKHYSVIYASPEAA
IHQRWRKVLRDWLKPKVCVLVFDEAHCISSWGLEFRPAYRQVSGLQSIINTCTLALSATA
TRKIQEDIYETLGFQTETTKVVAVLPDRPNIFLNVKNSTEKFEEELAWIVTHIKSNQRQR
KILLYVRSINICYNIYLWLLSSIEDNFFVHNTPSLENRRIEMFHANTDTESKERILTEYI
KPSGNIQVLISTVAFGMGINIPDVDIIVHWGLPTSCLSYWQEIGRCARDGRVGHAVCYGF
KRSVSKCEEEMKNLIKLESCARVSVLKNFHLRGMLTRDIDNLKRNIICNNDCEGNCTCKK
CKCCSVCSSLCSCPQRTKDHLQSFLT
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaagcgctttcgtcggtgttggagaagtttaaatttgatattaagttaaaa
gaagaacagcagaatattatatttagtattttaaggaagatggacgtttttgctctatta
ccaactggatttggcaagtccatgacgtatattttggtgcctttgcttgctgacgagtta
aagggaggtgcaccaagccatacagcgttagttgtatctccactgaaagcgttaatgaag
gaccaggtggaatttctcggccagcacaacgttagcgcagttgcgttgatggacgacaca
aaaagtcaagatgttgtgaacaagcattacagcgttatatatgcatcaccagaggcagct
atacaccaacgatggcgaaaagtattgagggattggctgaaaccaaaagtgtgtgttcta
gtgtttgatgaagcacactgtatttcatcatggggactggagttcagaccagcctatcga
caggtgtcgggattacagagcataatcaacacttgtaccttagcattatcagcaacagcc
acaagaaagattcaggaggatatttatgagactcttggctttcaaacggaaacaacaaaa
gttgttgcagtcctgccagataggccaaatattttcttaaatgtgaagaattcaacagaa
aaatttgaagaagaactagcatggattgtgacacatatcaagagcaaccagaggcagagg
aagatattactgtatgtcaggtccatcaacatttgctacaacatttatctgtggttgcta
tcttctattgaagacaatttttttgtgcacaacacaccatcgttagaaaatagaaggatt
gaaatgtttcatgcaaatacagacacagaaagcaaggaaagaattttgactgaatatatt
aagccatcaggaaatattcaagtgttgatttcgacagttgcatttggaatgggcatcaac
attccagatgttgacattattgtgcattgggggcttccaacttcgtgtctaagttactgg
caagaaattgggagatgtgccagggatgggagagttggacatgcagtatgttatggattc
aaaagaagtgtttccaaatgtgaagaggagatgaaaaacctaataaaacttgaatcatgt
gctcgtgtatcagttcttaagaatttccatctacgtggaatgctgacaagggatatagac
aatctaaaacggaacataatttgcaataatgactgtgagggaaattgcacatgcaaaaaa
tgcaaatgttgtagtgtgtgtagcagcctttgtagctgtccccaacgcacaaaagatcat
ctgcaatcattcctgacctag
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