Ostrea edulis (European flat oyster): 125661721
Help
Entry
125661721 CDS
T09123
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125661721
03036 Chromosome and associated proteins [BR:
oed03036
]
125661721
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
125661721
Chromosome and associated proteins [BR:
oed03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
125661721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
Tex_YqgF
SH2
HHH_9
Spt6_S1
HHH_3
Tex_N
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
125661721
NCBI-ProteinID:
XP_048749823
LinkDB
All DBs
Position
1:complement(15610517..15653437)
Genome browser
AA seq
1711 aa
AA seq
DB search
MDFMEDQAEESDVSSDEEGGQSDASGSGGESGGKSKVKKKTKKKSRQIISDSEEEEEEED
EEQIRKEMEGFIKDEEEEEEEEGEESGSESGKRKHEDSESDDQLEEEDYDLIEENLGVKV
KRKPKLKRIRMVSDEEDSDKEEMNEERERDALADELFDGDGDESEAPRERVSNEFESLDV
DEEDDEDDMDNFIVDENGEPIKHRQKKKKHIIHSDSALQEAQDIFGVDFDFDDIGYGEED
EFEEEDEYDDEDEARQRPKKGSKKKSLKKTIYEAFEPSEIERGFFTDQDNEIRMTDMPER
FQLRQVPVKPTEEGEVEEESEWIYKQAFSTPTVSQQNLLEQESGTYNRRGPSMINKIKKA
IDFMRNQYLEVPFIAFYRKEYVESDLNINDLWKVWQWDEKWTQLRSRKQNLIKLFEKMQN
YQFDTNSDPDKVLESNVRPLTDEDLDRVRNVQTMEELKDVYQHFLLYYGMDIPKMKMAQM
KKKSEGEKEEGETEPEQDLEQSDTIKHATRKTGYNICQEKKIDDIAEKFGLTPEQFGENL
RDNYQRHDVEQYPIEPLELAREKVCGQFPTEEEVLLGARHMVAMQISHDPTVRQVVRQAY
YERAKISVQPTKKGMKEIDESHSCFSMKYLKNKPVRDLKDEQYLKLAMAEEDRLLTMSFC
IDEESGNTQTYYEEIRQLYYRDEFSHLVQQWNLQRSQALERALMKLLYPQMEKELRAKLL
SEAKDGIVKACCRKLYNWLKVAPYQADQQLEDNNYEEEGLRVLGIGYSTDRDTAAFGVLI
DPEGQVTDFLRLEYICMRKNAFREVDRKGKENDLAKLKEFISTKRPHVVAVTAESKEALR
IVEDVQRIIQELTEEVEMPAINVELVDNEVAMVYENSNKGQGDFREYPVVLRHAISIARR
LQDPLIEFAQLCNTDEDILCLKYHPFQDQIPKDVLLNALTLEFVNRVNEVGVDINRSLAH
AHTAPLVQFVCGLGPRKGTYLLKILKQNNIRLENRTQLVTLCHMGAKVFVNCAGFIKIDT
FSLMDSTDSYVEVLDGSRVHPETYEWARKMAVDALEYDDTAEDANPAGALEEILESPERL
RDLDLDAFAEELERQGFGDKHITLYDIRAELNHRYKDLRTPYRSPLNEERFNMITKETPE
TFYVGKLVLGKVIGIAHRRPRGEQLDQANPVRNDETGLWQCPFCNRSDFPELSEVWSHFD
AGSCPGSAVGVKIILDNGVSGFLHTKNISDKHIKSPEERVKTGMTIHCRITKIDIDRFQV
DLTSKSSDLMDTDNHWRPPKDLYYDQDQEDKDREKEEEKVKHKARQSYVKRVIAHPSFHN
VGYRECEKLLESMDQGEAIIRPSSKGSDHLTVTWKVADGIMQHIDVKEEGKENAFSLGTS
LIIGSEEFEDLDEIIARHIQPMAAFARDVMNFKYYKETDGVKREILEKSLLEEKKKGPSR
IPYLLSLVKQYPGKILLSYMPRIKPRHEYISITPDGLRYRQQNFHSLNSLMRWFKEHFRD
PIPGTPASTRTPVPGSNFATPSINLQGVDAATIHRAAAGLPSNIYNTLAQVASATPRVAR
MTPGVTPGATPQVAGNFNNFNVPMGTPLMTPMMTPSHPMTTPANQPAQTPSYRPTPRAAT
TPAWPGVTPKATPRMGSTTPQHQGQTPRAGPSTAGMDWAKAAQMWAKRSGSTKPSTPRHG
QSPRGVRPSPRPSPRHEGYTAGDSTPLFDER
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atggattttatggaagaccaagctgaggaatctgatgtaagttctgatgaggagggaggt
cagtctgatgcgtcggggtcagggggtgaatcgggaggaaagtcaaaagtgaagaaaaaa
acaaagaagaaaagccgacagatcatctccgacagtgaggaggaggaggaagaagaagat
gaggaacagatcaggaaagaaatggaagggtttatcaaagatgaggaagaggaggaggaa
gaagagggtgaagaatcggggagtgagtcagggaaacggaaacacgaagactctgagtca
gatgatcagctggaagaggaggactacgacctgattgaggagaacttgggggtcaaggtc
aaaagaaagccaaaattgaaaagaattcgcatggtgtcagacgaggaggactctgataaa
gaggaaatgaacgaggaacgtgagagggatgctctagctgatgaattgtttgacggcgat
ggtgatgaatccgaggcgccacgggagagagttagtaacgagtttgagagccttgatgtg
gacgaagaggacgatgaagacgacatggataattttattgttgacgaaaatggggaacct
attaaacacagacagaagaaaaagaagcatatcatccattcagactcagcattacaagag
gctcaggacatctttggtgtggacttcgattttgatgatattgggtacggagaggaagat
gaatttgaagaggaagatgagtatgatgatgaagacgaggcgagacagagacctaagaaa
ggaagcaagaaaaagagtctaaagaagacgatatacgaggctttcgaaccatccgaaatt
gagcgtggattcttcacagatcaggataatgagattcgaatgacagacatgcctgaacga
tttcagctgcgtcaggtcccggtaaaaccgacagaggaaggtgaggttgaggaagaatca
gaatggatatataaacaggccttttctacacccacagtctcacagcagaacttgctggaa
caagaatctggtacttacaatcgccgaggacccagtatgatcaacaaaatcaaaaaagcc
atcgacttcatgagaaaccagtatttagaggttcccttcattgctttctacagaaaagaa
tatgtagagtctgacctcaacatcaatgatctctggaaagtttggcagtgggatgagaag
tggactcagttaaggtcaaggaagcagaacttgataaagttgtttgagaagatgcagaac
tatcagtttgacacaaactctgacccagacaaggtcttggagtccaatgtacgtccacta
acagacgaggatttagacagagttaggaatgtgcaaacgatggaggaactgaaagacgtg
tatcaacatttccttctctattatggtatggacattccaaaaatgaagatggctcagatg
aagaaaaaatctgagggtgaaaaggaggagggtgaaactgaaccagaacaggatctggag
cagtcggataccatcaaacacgccactcgaaaaacgggctacaacatttgtcaggagaag
aaaattgatgatattgctgagaagtttggactgaccccagagcagtttggtgagaatttg
cgagataattaccagagacacgatgtggaacagtatcctatagaaccactggagctagcc
cgggagaaagtctgtggtcaatttcccacagaggaggaagtgttgttaggggcacgtcac
atggtggccatgcaaatttcccatgatcccacagttcgacaagtcgtgagacaggcttac
tacgaaagggcaaagatctcagtccaaccaaccaagaaaggaatgaaggagatagacgag
tcacattcttgcttcagcatgaagtatctaaaaaacaaacctgttcgagatctcaaggat
gagcagtatctcaaattggccatggcagaagaggatcgtctgctaacaatgtcgttctgc
attgatgaggagtcggggaacacacagacttattatgaagaaatcagacagctttattac
agggatgagtttagccaccttgtccagcagtggaatctccagagaagccaggctctcgag
cgcgccctaatgaagctgttgtacccacagatggagaaagaactcagagctaaactttta
tccgaggccaaagatggcattgtgaaggcatgctgcaggaagctgtataactggcttaag
gtggcaccgtaccaggctgatcaacagctggaggacaataactacgaggaggagggcttg
cgtgtcctcgggatcggctactccaccgaccgagacacagccgccttcggagtccttatc
gaccctgagggtcaggttacagacttcctgcggctcgagtacatttgtatgcggaaaaat
gcattcagggaagtggatcgcaaaggaaaggaaaatgaccttgcgaagttgaaggagttt
atttcaaccaagaggccccatgtggttgctgtaacagcagaatctaaggaagccttacgg
attgtggaagatgttcagcggattattcaggaacttacagaggaagtggaaatgccagcc
atcaatgtggagttagttgacaatgaggttgccatggtttatgagaactccaacaaagga
cagggtgacttccgtgaataccccgtcgtcctgcggcatgctatttctatagctcgtcgc
ctacaggatccacttatcgagtttgcccagttgtgtaacactgatgaggacattctctgt
ctgaaataccatcctttccaggatcagattcccaaggatgttttattgaatgctctgaca
ctggaatttgtgaaccgtgtgaatgaggtgggcgtggacattaatcgatcgctggctcat
gcccacacggcacccctggtacagttcgtgtgtgggctgggacccaggaagggtacatat
ctgctgaaaatcctcaaacaaaataatattcgactggagaatagaactcagcttgtcaca
ctgtgtcacatgggtgccaaagtgttcgtaaactgtgcggggttcatcaaaattgacacg
ttcagcctaatggatagcactgattcctatgttgaggttctggatggttctcgagtacac
cctgagacgtatgaatgggctcgtaaaatggcagtggatgcactggagtacgacgataca
gcagaggatgcaaacccagcaggtgccctggaggaaattcttgagagtccagagagactg
agggacctcgatctggatgcatttgctgaggagttagagcgacagggtttcggagacaaa
catatcacattatatgacatccgagcagaactaaaccatcgctacaaagacctccgtacc
ccttaccgatcccccctcaatgaggagaggtttaacatgatcaccaaggagacacccgag
acgttttatgttggtaaactggttcttgggaaggtgattggcattgctcatcgtcgccca
cgaggagaacaactggatcaggctaatccagtccggaacgatgagaccggactctggcag
tgtccattctgtaaccgtagtgatttcccagaacttagcgaggtgtggagccattttgat
gccggaagttgtccaggctcagcagttggtgtgaaaattatactagataatggagtgagt
ggattcctacacacaaaaaacatcagtgataaacacataaagagtccagaggaacgagtc
aagacgggaatgacaatacactgtcgaatcacaaagatcgacatcgacaggtttcaggtg
gatttaaccagtaaatcatcagatctcatggacacagacaaccactggaggcctcccaaa
gacctatactacgaccaagaccaagaggataaagacagagaaaaggaggaagagaaagtg
aaacataaagccagacaatcttatgtgaaaagagtcatcgctcatccttcttttcacaat
gtgggatatagggagtgtgagaaattactggagagtatggatcaaggagaggccatcatt
cgacccagcagcaaggggtcagatcacctgactgtgacatggaaggtagctgatggcatt
atgcagcacatcgatgtcaaggaggaggggaaagaaaatgcctttagtttgggcacctcc
cttatcataggatcagaggaatttgaagacttggatgaaatcattgcccgccacatccag
ccaatggcagcgtttgcacgtgacgtgatgaactttaaatattacaaggagacagatggc
gtgaaacgggagattctggagaagagtttgttggaggagaagaagaaaggaccatcaagg
attccttatctcctgtctctggtaaagcagtacccggggaagattctcctgtcgtatatg
ccccgcattaagccacggcacgagtatatatctatcacgccagacggactgcgctaccga
caacaaaacttccactctctgaactctctgatgcgatggttcaaggaacacttcagggac
cccatcccaggtacccctgccagtaccagaaccccagtaccaggctctaactttgccaca
cctagcatcaatctccaaggtgttgacgcagcaacaatccatagagctgccgctgggttg
cctagcaacatctacaacacattggcccaggttgctagtgccacacctcgggtagcgaga
atgacgccgggagtcacaccaggggcaaccccacaagttgctgggaacttcaataacttt
aatgtgccgatgggaacgcccttgatgacccctatgatgactccttcacatcccatgaca
acacctgccaatcagcctgcccagaccccctcctatcgccccaccccacgggctgccact
actcctgcctggcctggagtaacccccaaagctacacctcgaatgggttctacaactccc
caacatcaaggacagactccaagagcaggacctagcacagcaggcatggactgggccaaa
gctgcccagatgtgggctaagagatcgggttccacgaagcccagtacaccaaggcatgga
cagagcccacggggagtgaggccctccccccggcccagccccagacatgagggatatact
gcaggagattccacaccattgtttgatgaacgatga
DBGET
integrated database retrieval system
