KEGG   Ostrea edulis (European flat oyster): 125662789
Entry
125662789         CDS       T09123                                 
Name
(RefSeq) SKI8 subunit of superkiller complex protein-like
  KO
K12602  WD repeat-containing protein 61
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    125662789
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oed03019]
    125662789
Messenger RNA biogenesis [BR:oed03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     125662789
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_ACSF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th eIF2A Beta-prop_VPS8 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_Nup120_160 PROPPIN Beta-prop_HPS5 RMC1_N Beta-prop_NWD2_C NBCH_WD40 Beta-prop_EIPR1 WD_LRWD1 Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_2nd Tricorn_2nd WD40_like Cytochrom_D1 WDR54 Beta-prop_RSE1_2nd GSDH Beta-prop_LRRK2 Vgb_lyase
Other DBs
NCBI-GeneID: 125662789
NCBI-ProteinID: XP_048751096
LinkDB
Position
8:complement(63923017..63932734)
AA seq 311 aa
MANTGLSQLYSIIFKQENAHEDSIWSCAWEQSDRDRSENIITGGIDDLVKIWKWTGEKLE
LRHTLEGHQLGVVSVDMNLSGTLAASSSLDSHVRVWDVDTGKCIKSMEAGPVDAWTISFS
PDSRILATGSHSGKINLFGVESGRKEESLDTRGRFTLSIAYSPDGKLIASGAIDGIINIF
DTQTGRLIHTLEGHAKPIRSLCFSPDSQLLVTGSDDNQIKIYDVQHANSVGTLSGHGSWI
LNVDFCPDNTHFVSSSSDKTVKIWNAGSRQCVHTFYDHSDQVWSAKYNCAGSKIVSVSDD
RAVHIYDCPPV
NT seq 936 nt   +upstreamnt  +downstreamnt
atggcgaacacgggtctctcacaactgtattccataatattcaagcaggaaaatgcccat
gaagacagcatttggagttgtgcgtgggaacagagcgatcgagaccgatcggaaaacatt
atcaccggaggcatcgatgacctggtcaaaatatggaaatggactggagaaaagttggag
ctaagacacaccctggaaggtcaccagctcggggtcgtctccgtggatatgaacctgagt
ggcacattggctgcgtcgagcagcttagacagccatgtgcgggtttgggatgtagacacg
ggaaaatgtatcaaaagtatggaggcggggccagttgatgcttggaccatcagtttttct
ccggattccaggattttagcaacaggaagtcacagtgggaaaattaacctgttcggggtt
gagtctgggcgtaaagaagaatctctagacaccagggggcgcttcacattaagtattgct
tatagtcctgatgggaaattaatcgcgtccggtgcaatagacgggattattaacatcttt
gacacacagacaggaaggctaattcacacacttgaaggtcacgccaaaccaatccggtcg
ttgtgtttttcaccagattctcagctgttggtaactggttctgatgataaccagattaag
atctatgatgtacaacatgctaactccgtcgggactttgtctgggcacgggtcctggatc
ctcaatgtagatttctgtccggacaatactcactttgtgtcgagttcatcagataagaca
gtcaaaatatggaatgccggcagccggcagtgtgtccacacgttctacgatcattccgac
caggtatggagtgcaaaatacaattgtgcagggtccaaaatcgtgtccgtatcagatgac
cgtgctgtacacatttacgactgtccaccggtctga

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