KEGG   Ostrea edulis (European flat oyster): 125665786
Entry
125665786         CDS       T09123                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125665786
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oed03041]
    125665786
   03036 Chromosome and associated proteins [BR:oed03036]
    125665786
Spliceosome [BR:oed03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    125665786
 Complex B
    125665786
 Complex C
   U2 SnRNP specific factors
    125665786
Chromosome and associated proteins [BR:oed03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    125665786
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT Htt_N-HEAT_1 HEAT_2 Vac14_Fab1_bd XMAP215_CLASP_TOG YnfE UNC45-central DUF2298
Other DBs
NCBI-GeneID: 125665786
NCBI-ProteinID: XP_048754616
LinkDB
Position
10:complement(31750452..31769743)
AA seq 1338 aa
MAALTREAIEEEVRNIQNKKKALESKGVELDEDEEMRVGLGSAGHYDRDIYSGGKTSLIG
YDTSIAASEERDDEEDASAAFQPKLSSYTAPLNFLNDTLNDKDFDPMQEHRPQRIRDREG
TYRAQLKNRIISPERYDPFADGGKTPDVNDRTFAKLMMSSALDREKDSYEKQLKEKAKAG
ELRVVNGSDSQKQAAAAAAEKKKRRWDQATDDSSAKKAKTTWDAAETPSNTRWDETPGRK
TGAETPGATPGQSTRMWDATPGHLTPGATTPGRDATPGHQNTPSARRNRWDETPRTERET
PGHGSGWAETPKTDRGGDLIQDTPTPGASKRRSRWDETPGAHTPSMTPSAMTPSMTPGNQ
TPGGSTPSGFTPGGSTPSGFTPGGITPSGTTPTGPKAMAMATPTPGHLMSMTPEQLQAYT
WQREIDERNRPLSDDELDSLFPPGYKVLQPPAGYIPIRTPARKLIATPTPMAGTPVGFKM
QTPDSKTQIVDMQPKGNLPMMKPDDMQYFDKLLVEVDEETLSPEEQKERKIMKLLLKIKN
GTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRN
TTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKNL
VEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAF
LKAIGYLIPLMDAEYANYYTREVMLILKREFQSPDEEMKKIVLKVVKQCCATDGVAPQYI
KDEILPPFFKHFWNQRMALDRRNYRQLVDTTVEIANKVGAAEIIQRIVDDLKDEAEQYRK
MVMETIEKIMGNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNALGKRVK
PYLPQICGTILWRLNNKSAKVRQQAADLISRIAIVMKTCQEERLMGHLGVVLYEYLGEEY
PEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRG
AEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQER
QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKDYI
YAVAPLLEDALMDRDLVHRQTSMAAIQHIALGVFGFGCEDALTHLLNYVWPNIFETSPHV
VQAFMGSIEGMRVGIGPAKILQYALQGLFHPARKVRDVYWKVYNTVYIGAQDGMIPAYPR
VPNDHKNNYVRYELDYLL
NT seq 4017 nt   +upstreamnt  +downstreamnt
atggctgccctcacacgggaagccattgaagaggaagtgcgaaatatacaaaataagaag
aaggcccttgaaagtaagggggtagaactagatgaagatgaggagatgcgagtgggcctg
ggctctgcaggacattacgaccgagatatatatagtgggggaaagacatcgctgattggt
tatgacacatccattgcagcaagtgaggaaagagatgatgaggaagatgccagcgccgct
tttcagccaaagctttcatcctacacagcccccctgaatttcctcaatgatacactgaat
gacaaggattttgatcccatgcaagaacacagaccacagaggatccgggatagggaaggg
acatatagagcacagctgaagaacaggataatctcccctgaacgctacgatccatttgct
gatggtgggaagactccggatgttaatgatagaacatttgccaagctcatgatgagctca
gctttggacagagaaaaggattcctatgaaaagcaattgaaagaaaaagccaaagcgggt
gaactgcgtgtagtgaatggcagtgactcgcagaaacaagcagcagccgctgctgcagag
aaaaagaagcggcgctgggaccaggctacggacgactcgagtgccaagaaagccaagact
acttgggacgctgcagaaacgccatcaaacacccgctgggacgaaacgccaggacgcaag
actggagcagagactccaggtgccacccctggacagagtaccaggatgtgggatgcaacc
cctggacacctcaccccaggggccaccaccccggggagagatgccacaccaggtcatcag
aacacacccagtgcgcggagaaatcgctgggatgaaacacctagaactgagagggaaact
ccagggcatggtagtggctgggcagagacccccaaaactgacagaggaggtgatctaatt
caggacacccccaccccaggggctagcaagagacggtcccgatgggatgagacccctggg
gcccacactccatcaatgacccccagtgctatgacacctagcatgactccaggtaatcaa
accccaggtgggtctacacccagtggctttaccccaggaggttcaactccgagtgggttt
acaccgggtgggatcacccccagcggtacaacaccaactggacccaaagctatggcaatg
gcgacgcccacacccggtcacctgatgtctatgacaccagaacagctacaggcgtacaca
tggcagagggaaattgacgagagaaatcgacccctgtcggatgacgaactggactcttta
ttccctcctggttacaaggttctacaacccccagcagggtatattcccataaggacccct
gcaaggaagctgattgccacacccacacctatggctggtacccctgtgggcttcaaaatg
cagacccctgattcaaagacccagatcgtggacatgcagcccaagggaaacctgcccatg
atgaaacccgatgacatgcagtactttgacaaacttctggtcgaagtagacgaagaaact
ctatccccagaggaacagaaagaaagaaaaatcatgaaattacttctgaaaatcaagaat
ggaacaccacctatgaggaaggcagctctccgacagattacggataaggcccgagaattt
ggagcaggtccactgttcaatcagatcctgccccttcttatgtcccccactttggaagac
caggaacgacatttgctggtcaaggtcattgaccgaattctgtacaaactggacgacctt
gttcggccgtacgtccacaagatcttggtggtgattgaacctctgctgatcgatgaagat
tattatgccagagtggaaggtcgagaaatcatctctaacctggccaaagctgctggtctg
gccactatgatctccacaatgagaccagacatcgacaacatggatgaatacgtgcgtaac
accacagccagggccttcgctgttgtagcctctgccctgggaattccatcactactgcca
tttttgaaagctgtgtgtaagagcaaaaagtcttggcaggcgagacacacaggaattaag
attgtacaacagattgccatcctcatgggatgtgctatcctgccacatttgaagaacctc
gttgagatcattgaacatggactggtggacgagcagcagaaggtccgcaccatcacggcc
ctggccctggctgcactggctgaggccgccacaccctatggtattgagtcctttgacagc
gtcctcaaacctctttggaagggtatcaggcaacacagagggaagggtttagcggcgttc
ctgaaggccatcggttacctgatcccattgatggatgctgaatatgccaactactacacc
agagaagtcatgctcatcttaaagagagagttccagtctcctgacgaggaaatgaagaaa
atcgtcttaaaggtggtgaagcagtgctgtgcaacagatggtgtggcacctcagtatatc
aaggatgaaatcctgcctccgttcttcaaacatttttggaatcagagaatggctttggac
agacgaaattatagacagctggtggacaccacagtagagattgccaataaagttggagcc
gctgagatcatccagagaatcgtagatgatttgaaggatgaagctgaacagtacaggaag
atggtcatggagaccattgagaagatcatggggaatctcggagcagccgacattgactct
cgtctggaggaacagcttattgatggtatcctgtatgccttccaggaacagaccacagag
gatgtggtgatgttgaatggctttggtacggtggtgaatgctctgggtaagcgcgtgaag
ccttacctccctcagatctgtggtaccattctgtggcgtctcaacaacaagtctgccaaa
gtacgtcaacaggcagctgatctcatctccagaatcgcaatcgtcatgaaaacctgccag
gaggagcggttgatgggacacttgggggtggtgctgtacgagtacctgggagaggaatac
ccagaggtattgggaagtatcctaggtgctcttaaggccattgttaatgtcatcggaatg
accaagatgactcctcctattaaagaccttctgccacgtctcactccaatcctcaaaaac
agacatgagaaggtgcaggagaactgtattgatctggtgggaaggattgctgaccggggg
gcagagtacgtctcggccagggagtggatgaggatctgctttgagttactggagcttctg
aaggctcacaagaaggctatccgcagggccaccgtcaatacattcggttacattgccaaa
gctattggtccacacgatgtgttagccacattactaaacaacctgaaagttcaagagaga
cagaacagagtgtgtacaacagttgccatagcaattgttgcagagacatgttcccctttt
actgtgctccccgcgcttatgaatgaatacagagtgcccgagctgaatgtgcagaacggg
gtgttgaaatctctatccttcatgttcgagtacatcggggagatgggcaaggattacatc
tacgctgtggctccactcctggaggatgctttgatggacagagatctagtgcacaggcag
acgtctatggcagcgatacaacacattgccctgggggtatttggctttggatgtgaagat
gctctcacccatctgttgaattatgtgtggccaaacatttttgagacctcccctcatgtt
gttcaggcgtttatgggatctattgaggggatgcgtgttggcattggtccagccaaaatt
ctacaatacgccctacagggtctgttccatccagcccgaaaagtccgcgacgtttattgg
aaggtgtacaacacggtgtacattggtgctcaggacggcatgatccctgcctatcccaga
gttccaaacgaccacaaaaataactacgtcagatacgaactggactatctgctataa

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