Ostrea edulis (European flat oyster): 125666788
Help
Entry
125666788 CDS
T09123
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like isoform X2
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125666788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oed03041
]
125666788
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125666788
Spliceosome [BR:
oed03041
]
Complex C
Other components
Step II factors
125666788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
GIPC1_GH2
AAA_22
AAA_19
nSTAND3
ABC_tran
Sigma54_activ_2
nSTAND_NTPase5
AAA_16
AAA_30
TsaE
Motif
Other DBs
NCBI-GeneID:
125666788
NCBI-ProteinID:
XP_048756023
LinkDB
All DBs
Position
10:complement(10752678..10784790)
Genome browser
AA seq
1226 aa
AA seq
DB search
MDELQKLEYLSLVSKVCTELENHLGLNDKDLAEFIIHLAEKNDTYEKFKKALDENGAEFA
DSLVANLLRLIQKMKPKEKKEIKKEEVDSETVQSDIDIKKKLFPGLAMANDPKVRIMLVD
EDEEKPIKIETVEDVKPIKMDKSDTDVAGDMLNELEALMNDPAPTRQVRERDKQKNRNRS
RDRDRSRSRDRSRSRDRDRRRRRSRSREKSRSRSRDRDRRRHKSRSRERDDRRRERRRSR
SRDRDNRKGRQRNREEFPMNPEPGRIYNGRVTTLMQFGCFVQLEGLRKKWEGLVHISQLR
REGRVTNVSDVVQRGQKVKIKVLSVNGQKTSLSIKDVDQETGEDLNPSKTKTLVGGEIHN
NQVEARNPDRPSTMPLVDHVPDIDDVGEKKRYQRMSSPERFEIQQMIAANVIDKSELPDF
DEEMGVLLKDDDSDEDIEIELKEEEPPFLTGHGRGGLDLSPVKIVKNPDGSLSQAAMMQS
ALQKERRELKQAQREAEMDAVPSGLNKDWIDPMPEGGDRKLAAQMRGAGMAPADLPEWKR
HITGGQKASYGKKEKKSLLEQRQSLPIYKLKDELVKAVSDNQVLIVIGETGSGKTTQITQ
YLAEAGYTTSGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETKIKY
MTDGMMLRECLIDGDLTQYNIIMLDEAHERTIHTDVLFGLLKTAVLKRPKLKLIVTSATL
DAVKFSQYFFEAPIFTIPGRTYPVEVLYTKEAETDYLDASLITVMQIHLMEPPGDILLFL
TGQEEIDTACETLYERMKALGPEVPELIILPVYSALPSEMQTRIFEPTPPGSRKVVIATN
IAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDQLIVSPISQAQAKQRAGRAGRTGPGKCY
RLYTERAYRDEMLPTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMQTLISAMEQ
LHALSALDDEGLLTRLGRRMAEFPLEPMLSKMLIMSVHLACSDEILTVVSMLSVQNVFYR
PKDKQDLADQKKAKFHQSEGDHITLLAVYNSWKNNKFSSPWCYENFVQIRTLKRAQDVRK
QMLGIMDRHKLDVVSCGKNTARVQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSA
LFNRQPDWVIYHELVLTTKEYMREVTAIDPKWLVEFAPNFFRFSDPTRLSKQKKQQKIEP
LYNKYEDPNSWRISRAFKKVHTKVTF
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttacaaaagctagagtatctgtctttggtttctaaagtttgtactgaactt
gagaaccatttgggactcaacgataaggatttagctgaatttatcatacatctggcagag
aagaatgatacctatgaaaaattcaaaaaagctttagacgaaaatggtgcagagtttgct
gattccttggtggcaaatttgttgaggttgattcagaaaatgaaaccaaaagaaaagaag
gaaatcaaaaaagaggaagtcgacagcgagactgtccaaagtgacatagatattaaaaag
aagctctttcctggtctggccatggctaatgacccaaaagtcaggatcatgctagtggat
gaagatgaagaaaaaccaatcaaaatagagacagtggaggatgttaagccaatcaaaatg
gataaaagtgacacagatgtggctggtgatatgttaaatgagttagaggctctgatgaat
gacccagccccaacacggcaagttagggagagagacaaacaaaaaaacagaaatcgaagt
cgcgatcgagacagaagtcggagccgagacagaagtcggagccgagatcgagaccgaagg
agaagaaggagtaggtctagagagaagtcgagatcaaggagtcgagacagagataggcga
agacataaatcaaggtcacgcgaaagagatgacaggcgacgagaacgacggaggtctagg
agtcgtgaccgagacaacaggaaaggaagacagaggaacagagaggaatttcctatgaat
cctgaaccgggaaggatttacaatggacgagtaactacgcttatgcagttcggttgtttc
gttcagttagagggcttaagaaaaaagtgggaaggacttgttcacatatcacagttaaga
agagaaggaagagtcacaaatgtcagtgatgtagtgcaaagaggtcagaaggtcaagatc
aaagtgttatctgttaatggccagaaaaccagtttgtccataaaggatgtagaccaggag
acaggtgaggacctaaacccttcaaagaccaagactttagtgggcggggaaattcacaac
aatcaagtggaggccaggaaccctgatcgcccctccaccatgcctctggtcgaccatgtc
ccagacattgacgacgtgggcgagaaaaagcgatatcaacgaatgtcttctccggagaga
ttcgaaattcaacagatgattgcagctaatgtcatcgataagtcagagttgccagatttt
gatgaggaaatgggagtgttgctgaaggacgatgattctgatgaggatattgagatagag
ctcaaggaagaagaaccaccatttttgacagggcatggtcgaggtggacttgatcttagt
cctgttaaaattgtcaagaatcctgatggatcgctgtcacaagccgcaatgatgcagagt
gctctccaaaaggagaggcgggaactgaaacaggcacagagagaggctgaaatggacgcc
gtgccatcaggactgaacaaggactggattgatcccatgccagaggggggagacaggaag
ttagccgcccagatgaggggcgctggaatggctccagcagacttaccggagtggaaaagg
cacattactgggggtcagaaggcctcctatggaaagaaggaaaagaagtcactcttagaa
cagcggcaaagtctgcccatatataaacttaaagatgagctagtcaaggcagtttcagac
aaccaggttttgattgtcattggggagacggggtccgggaaaaccacacagattacacaa
tacctcgccgaggctggttacacaacgtcggggaagatcggctgtacgcagccacgacga
gtcgctgccatgtcggtagctaagagggtatccgaagagttcggttgtcggctcggtcag
gaggtgggttacacaattcgttttgaggattgcacgagtcccgagacgaagatcaaatac
atgacagacggaatgatgctgagagaatgcctgatcgatggcgacctgacgcagtacaac
atcataatgttggacgaagctcacgagcgtactattcacactgacgtgctgtttggatta
ctgaaaacggctgttctaaagcgacccaaactgaagctgattgtgacgtccgctactctg
gatgccgtcaaattctcccagtacttctttgaagctccaatttttaccatcccgggaaga
acctacccagttgaggttctgtacacgaaggaagcagagacagactacctcgacgcctcg
ctgattacagtcatgcagattcacctgatggaaccgccaggtgacatccttctgtttttg
acgggtcaggaggagattgatacagcctgtgagacactgtatgaacggatgaaggccctg
gggccagaagtcccagagctgatcatcctccctgtgtacagtgcgttacccagtgaaatg
cagaccaggatatttgaacccacacctccaggatccaggaaggtagtcatagctactaat
attgcggagacttccctaaccattgatggtatttattatgtggtggatccaggattcgtg
aaacaaaaagtttacaactctaagactggcatggatcagctgatcgtctcgcctatatct
caggctcaggccaaacaaagagctggtcgggcaggacgaactggtcctgggaaatgttat
cgtctctacactgagcgggcataccgagatgagatgctgccgaccaacgtccccgagatt
cagagaacaaacttggccagcactgttctgtctctgaaggccatgggtataaacgacctc
ctgtccttcgactttatggatgctcctccaatgcagaccctgatatctgccatggaacag
ctccatgcactcagtgctctggacgatgaaggtctcctaacaaggctgggaagaaggatg
gcagagtttcctttggaacccatgttgtccaagatgctgatcatgtccgtccacttggcc
tgcagtgacgagattttgacagttgtctccatgttgtcagtccaaaacgtcttctacaga
ccaaaggataaacaggacttagctgaccagaagaaggctaaattccaccaatcagaggga
gatcacatcacactgctggctgtgtacaattcctggaagaacaacaagttctccagtcca
tggtgctacgaaaattttgtacagatccgaactctgaagagagctcaagatgtccgtaaa
cagatgttgggtataatggacagacacaagttagatgtcgtcagctgtggtaagaatact
gctcgggttcagaaggctatttgcagtgggtttttccggaacgcggcaaagaaggatccc
caagaggggtatcgaacccttgttgacagtcaggtggtgtacatccacccgtccagtgcc
ctgtttaacaggcaacctgactgggtgatttaccacgaacttgtactgactaccaaggaa
tacatgagggaggtgacagccattgatccgaagtggttagtggagtttgcccccaatttt
ttccgcttcagtgaccccacaagactcagtaaacagaagaaacagcagaaaatcgagcct
ctgtacaacaaatacgaggacccgaattcctggagaatctcgagagcgttcaagaaagtc
cacaccaaagtcaccttctaa
DBGET
integrated database retrieval system
