Ostrea edulis (European flat oyster): 125668686
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Entry
125668686 CDS
T09123
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125668686
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
125668686
3'-5' decay
Other 3'-5' decay factors
125668686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
zf-C2H2_jaz
TPR_19
PAM2
PhoH
zf-CCCH
Bac_DnaA
UvrD-helicase
AAA_16
zf-C2H2_4
AAA_22
AAA_7
zf-CCCH_4
DDE_Tnp_1_6
zf-C2H2
AAA_14
AAA_5
MOV-10_Ig-like
Motif
Other DBs
NCBI-GeneID:
125668686
NCBI-ProteinID:
XP_048758985
LinkDB
All DBs
Position
4:complement(61556461..61605882)
Genome browser
AA seq
1678 aa
AA seq
DB search
MDKDKPSDTSRHDRPQSIEHVLTLINSLVKEKNFQDALEHTNTALAKYKNNEKLQEKKIK
ILCHQGRFEEAYDLAKNWKEAEPQNAVAIKEFRKLKRVIQVLRDQDSGEEEEEEDENSTF
TSDTTPPTNITQKEPIPSPPIKVIHTINSKSENEGACALNDEKDDEDFSCTFCDIKFVSS
SELETHCRSDLHKKRITSDEDQNWKYRVPPRNLTSEEFTICRSVLDADLNRFEDTRKCTF
GDKCTQAHSKDELQEWKERFKFRKQQIKRARDKHLHGNTYAEQLMEKLVNAENSKSVMIQ
NVEYAKVHVNSELKVNMTTKKCTNAWTFTITSKRSLHRVTLLDDTNRTYFYIASISVGPK
KTQKYQNLETHCQEWVNPDYTTRHSGEYVYRVKVVFKTDIYGTFRQTLVYDFGLEPVLSR
EMQIESAPITDIEKLSKDLVLSEQGRWKVESVDLVPFENKPVPETEEEKQLLSKYSLPEA
DKFRLSEHLMHPPSKETYRIWMHEMLYIEEWAQMDHISRYNIKTSLQLVNRFLLVPGSLT
GAKYAQGGELFARMKLDDELSEDSAGGRLILMSSSVAWLAPYNPDDKMISRQNKKVYQVL
LEDKGKNFIFLRLPEKCVSELNLTGDQEFHAEIQFQLNRVPMCEMHSAIDQLPTLDLVFP
PPQRIPTLPWFPEDMEFSETVSERLNEKQKAAIRGITAAGDKCLPPLLLVGPWGTGKTYT
LAQAAKHALEVEENRILICTHSNSAADLYIKDFIHPIVKEGHMDAVPLRIYYRHRWVQTV
PDVVLQYCLLEMSASQGNFRMPSREEVDKHRIIITTLKTARYLCDLDLPQGYFSHIFVDE
AAQALESETLIPLSLAGRTTKIILAGDHMQLNPEVYSDFAKQQGFQKSLLDRLYELYPDD
CPCKIMLCENYRSHEAIIDFTSDLFYDGKLISSGNQPKHPSYYPLTFFSTRGEDLQHENS
TGFYNIAEVHEVVDRVDDLQKTWPPEWGDIEGNIGVVAPYSDQVFRIRSELRKRKMQNVS
VERVFNVQGKQFRAIILSTVRTRHTCSSDSSQEDVYDYGFLSNVKLLNTALTRAQSIVVV
VGDPLSLCLVGKCRKVWEYFLETCNEQNSFFGLKFSVLKAQLNSAELRKTYVLNPLAPEF
VPNRLYHVTSQHNMGSGGVGPHSPANPGYFVGQRMMYPGAPYPQQMYVPVPYQGYYSPVM
YRPYMSPLVGGRGRVPARLVYPRQVQVGASPAKSSSPAKSSGSDGERVASPDITRNTESP
QGHGSNKKSHSSRSRAMVYVPRIPAPYPAMYYPYQPYPGYYYLPEDPRLAQTHARYPYIP
PQVFPHPYPAGPFIGPSIRPSQASPENTPSPGERSPNSQRSHSLSPGPQRPPRSQSPALS
PSSAAAMAGAHFQLLPNVKHIPVHLYTKAGSSGSNSRSSTPLGGRDSPATDKAGEEVRAS
MDHEYLKSVSPKLDLQERRASAQSPLARVISQRQGYIREELEAMTSHSTHYQNIMAVNRS
GSSTMQNGGSGMEKGRNDKKPSKLDLHSATGFSRQFSEDITTPTEITNLVKMIDDIDDQE
ANELSHQSFAAHKNTTGRLYLNIPQQQDLTMGGSASSSPPSGSPPLGDQKPTYAGVLRRR
LPSAQGDIDASLLEPQTPLTPLGFTTPGTEIDTDPLGILRNLNINSSAENQRTYKYFS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggataaagacaaaccgtcagacacatcaaggcatgatcgcccacagagtattgagcac
gtactgacactcatcaacagtttagtcaaagagaaaaattttcaagacgctttagaacac
acaaacactgccttagcaaagtacaaaaacaatgagaaattacaagaaaagaagatcaaa
attctgtgtcatcagggaaggtttgaggaggcgtatgatttagccaagaactggaaagaa
gcagagccacagaatgctgtggcaattaaagagtttaggaagttaaagcgagtgattcaa
gttttgcgagatcaggattcaggagaagaagaggaggaggaagatgagaatagcaccttt
acatcagacactacaccacccacaaacatcactcaaaaagagcctatccctagtccaccc
ataaaagtgatccataccatcaattcaaagtcggagaacgaaggtgcatgtgcactgaat
gatgaaaaggatgatgaagattttagctgtacattctgtgacatcaagtttgtatcatcc
agtgagctggagactcactgcaggagtgacctgcacaaaaaaagaatcacatcagatgaa
gatcagaattggaagtatagagtcccccccagaaatttgaccagcgaagagttcacgatt
tgtcgcagtgttttagacgctgacttgaatcgctttgaagataccagaaagtgtacattt
ggggacaagtgtactcaagcacattcaaaagatgaactgcaggaatggaaagagcgtttc
aagtttcggaaacagcaaatcaaacgagcgcgagacaaacatctccatggcaacacgtat
gcagaacagctgatggaaaagttggtcaatgctgaaaactcaaaatctgtgatgattcaa
aacgtggagtatgctaaagttcatgtgaactctgagttaaaagtgaatatgaccaccaag
aagtgcactaatgcatggacattcaccatcaccagcaagagaagtttacatcgggtgacc
ttgttggacgacacaaatcgtacctacttctacatcgccagcatatctgtgggaccaaaa
aagacccaaaagtaccagaatctggagactcactgccaggaatgggtcaatccagactac
acaacacgacactctggagagtacgtctatagagtcaaggttgttttcaagacggatatt
tatggaactttccgacagactctggtttatgactttggattagagcctgttctcagtagg
gagatgcaaatagagtcagcacccatcacagacatagaaaaactcagcaaagatctagtt
ctcagcgagcagggccgctggaaagttgaaagtgtagatttagtcccatttgaaaataag
ccagtacctgaaacagaggaggaaaaacagcttttgtcaaaatacagtttacctgaggca
gacaagttccgactgtcagagcacctgatgcacccacccagcaaagaaacttacaggatc
tggatgcatgaaatgctgtacattgaagagtgggctcagatggatcatatttctagatat
aacataaagacttccctgcagcttgttaatcggtttttgcttgtccctggatctctgact
ggagccaagtatgctcagggtggggaactgtttgcacgcatgaagctggatgatgaattg
tcggaagattcggctggaggacgtttgattttgatgagttcaagtgtagcatggctagcc
ccctataatccggatgataagatgatttctaggcagaataaaaaggtctaccaggtactt
ttggaagacaagggaaagaatttcatatttctgcgacttccagagaaatgtgtatccgag
ctgaacttaacgggtgatcaggaattccacgcggagatccagtttcaactaaaccgagtt
cccatgtgtgaaatgcattcagctattgatcagctccctaccctggatctggtgtttccc
ccaccccagaggatcccaactttgccttggttcccagaggacatggagttcagtgaaaca
gtgagtgaacgactaaatgagaagcagaaggcagcgatccggggcatcactgcagcaggg
gacaagtgcctccctccactgctgctggtgggaccctgggggacgggcaagacatacact
ctcgcgcaggcagcaaagcacgcactggaagtggaagaaaacaggatcctcatctgtacc
cattctaacagtgctgcagatttgtacattaaagattttattcaccccattgtgaaagag
ggccacatggatgcagtgccactgcgtatatactaccgtcatcggtgggttcaaactgtt
ccggacgtggttctgcaatactgtctcctagaaatgtctgcctcccagggtaatttcaga
atgccatcccgagaggaggtagacaaacatcgcatcatcatcaccacgctcaaaactgcc
cgatatttatgtgacttagacctccctcaagggtacttcagccatatatttgtggatgag
gcagcccaagctctggagagcgagactctgattcctttgtctctggctggcaggaccacc
aaaatcattctggcaggggaccatatgcagttgaatccagaagtgtactcggactttgcc
aagcagcaaggctttcaaaaatctctgctggacagactttatgagctgtaccctgatgac
tgtccatgtaaaatcatgttgtgtgagaactacaggtcacatgaggcgattatcgacttt
acttcagacctattttacgatggtaaactaatatcaagtgggaaccagcccaaacatcct
agctactaccccctaacatttttctccactagaggtgaagatttacaacatgagaacagc
acaggcttttacaatattgcagaggtccatgaagttgtagacagagtggatgaccttcag
aaaacctggcccccagagtggggtgatatagagggcaatattggtgtagtagctccatat
tcagatcaggtgtttcggattcgttctgagcttaggaaaagaaaaatgcaaaatgtcagt
gttgagagagtgttcaatgtacaaggtaaacagtttcgagctataattctgagcactgtt
cggactcgacatacctgtagttcggactcatcccaggaggatgtatatgactatggtttc
ctgtccaacgtcaaactgctgaacactgctctcacacgagcccagtccattgtcgttgtt
gtaggagaccctctgtctctctgtcttgtaggaaaatgcagaaaagtgtgggagtatttt
ctagagacgtgtaatgaacaaaacagcttctttggcttgaaattcagtgtactgaaggct
cagttaaacagtgcagaactaaggaagacgtatgtcctgaatccgctggccccggaattc
gttcccaatcgtttataccatgtgaccagtcaacacaacatgggatccggaggggtgggt
ccacacagtccagcaaaccctgggtattttgtgggtcaaaggatgatgtacccaggggcc
ccgtatcctcaacagatgtatgttcctgttccataccaaggctactattccccagtaatg
tacagaccgtacatgtccccactggttggaggaaggggcagggttccagccagacttgtt
taccctagacaggttcaagtgggtgcctcccctgcaaaatcatcatctcctgcaaaatct
tcaggctctgacggtgaaagagtggctagtcctgatataacaagaaacacagagtccccc
cagggtcatggatcaaacaagaaaagtcactcctcgaggagtagggccatggtgtatgtt
cctcggatacccgcaccttatccagccatgtattatccctaccagccttatcctggatat
tactacctacccgaggacccaaggttagctcaaacccatgctagatacccatatattcca
ccacaagtgtttccacatccttaccctgcagggccatttattggtccctccattagacca
tctcaggcctcccctgagaatactccttcaccaggtgaaagaagtcccaactcccagagg
agccattctctctctcctgggcctcagagacccccaagatcacagtctcctgctctgtct
cccagttcagctgctgctatggcaggtgcccattttcagttactgcccaatgtgaagcat
ataccagtacatttgtataccaaggcgggaagttctggcagtaactctaggtcaagcact
cctttgggtggaagagactcgccagcaactgataaggcaggtgaggaagtgagagctagc
atggatcatgaatatctgaagtctgttagtccaaaactggacttgcaggaaagaagagca
tcagcacagagtcctcttgctagagtgatttcacaaagacagggctacatcagggaggag
ctagaagccatgacatcacacagtacacattaccagaacatcatggctgttaacaggagt
ggtagttctacaatgcagaatgggggaagtggaatggagaaaggcagaaatgataagaaa
ccatcaaaattagatctccattctgccacaggattcagccgccagttcagtgaagacatc
accacccctacagaaatcacaaatttggtaaaaatgattgatgatattgatgatcaagag
gcaaacgagttatcccaccaatcgtttgctgcacataagaataccactggacggttatac
cttaatattccccagcagcaggacttaaccatgggaggttcagcttcctcctccccaccg
tcaggtagtcctcctttgggagatcagaaacccacctatgctggtgtccttagacgcaga
ttgccctcggcccagggcgatattgatgctagtctgctagagcctcaaacgcctcttact
cctctaggatttacaacacctggtacggaaattgacacagatccactgggcattctaaga
aacctgaacatcaattcctcggcagaaaatcaaagaacgtacaagtatttctcctaa
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