Ostrea edulis (European flat oyster): 125669472
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Entry
125669472 CDS
T09123
Name
(RefSeq) TATA box-binding protein-like 1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125669472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oed03000
]
125669472
03021 Transcription machinery [BR:
oed03021
]
125669472
Transcription factors [BR:
oed03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
125669472
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125669472
RNA polymerase III system
TFIIIB
125669472
RNA polymerase I system
SL1/TIF-1B
125669472
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
NAT10_TcmA_helicase
SCP1201-like
Motif
Other DBs
NCBI-GeneID:
125669472
NCBI-ProteinID:
XP_048759959
LinkDB
All DBs
Position
4:42782613..42793361
Genome browser
AA seq
281 aa
AA seq
DB search
MTDIQECLPRETQGMEQVADLGNLTELRENAASAEANGYILEDEPPTIDIIINNVVCSFN
TRCHLNLRNIAMEGSHVEYRREQSMCNMKIRRPYTTATIWSSGKIVCTGATSEEESKIAA
RKFARKLQRLGYTVKFTNFRVVNVLGTCGMPFRIKINSFSQKFPKEASYEPELHPGVTYR
LKEPKATLKIFSTGSITVTAPSVANVQAAIEHIFPLVSEFKAADKDTDKDIVAQEIKFMQ
KQRGSLQPKQPVSKYEDYEKVEVYDTDYSDDEEFDSDESQD
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgacggatattcaagagtgccttccgcgggagacacagggtatggaacaagtggcggac
ctcgggaacttgacggaattgagagaaaacgctgcgtctgctgaggccaatggttacatt
ctggaggatgaacccccgacaatagacataataattaacaatgttgtctgcagctttaac
acacggtgtcatctcaacctcagaaatatcgcaatggaaggatctcatgtggaatacaga
agggaacaatcaatgtgcaacatgaaaatcagacggccttacacaacagcaacaatttgg
tcatcaggcaaaatagtttgcacgggagcaacaagtgaagaagaatccaagatagccgct
agaaaatttgccagaaaattacagcgtctaggatacaccgtgaagtttaccaacttcagg
gttgtcaacgtgcttgggacatgtggcatgccgtttcgtatcaagataaattccttttca
caaaaatttccaaaagaagcaagttatgaaccagagttgcacccaggtgtgacctatcga
ctgaaagaaccaaaagctacccttaagatattttctacaggaagcatcactgtaacagct
ccgagtgtagcgaacgttcaagctgccatagaacacattttcccgttagtctcagaattc
aaagctgcagacaaagacacggataaagacattgtagctcaagaaattaaattcatgcag
aaacaacgaggctcactgcaaccaaagcaacccgtgtccaagtacgaagattacgaaaaa
gtggaagtgtacgacactgactatagtgacgacgaagaattcgacagcgatgaaagtcaa
gattga
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