Ostrea edulis (European flat oyster): 125669647
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Entry
125669647 CDS
T09123
Name
(RefSeq) nipped-B-like protein isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oed03036
]
125669647
Chromosome and associated proteins [BR:
oed03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
125669647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
Motif
Other DBs
NCBI-GeneID:
125669647
NCBI-ProteinID:
XP_056020033
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All DBs
Position
4:complement(85544516..85584597)
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AA seq
1983 aa
AA seq
DB search
MNSDVPSVPITTLAGIHSLTDLLPELPLPTPTSSTSHNKTLLHNAKLKETSKRLLASRDT
GLTQQLVGVLHKTSTEYLELKDSTSDGGIDGNPPELLKAILSQEPATFQGSRQCYENGSQ
KDVYNVGSQHYQNNLLGEDPSKFEHPYGNYTPGIVNGEHPGLSNQYPEYQGQGVTKNLGT
TQGSLAENLFHGETENHGVHSSHHKKRLKNSEPVVLLEPLNNLPPHASGDASSSASTESY
GGEKKKFKGSHPVVLLEPLDKQVLRRHTRSKTLKSIQHGGSVKTKEDKKRGRRHHDSGDD
YDDRHGKRRRRHSDSDADSPPDVARKKKKDKRHRRVNQQALSVEELLESPTFKKFSSSME
YVLEASEDTNFGSLDLNDEEVECPRESLIANNILTDLCGETAKLKSLGVMNQVPADRLVK
LLTILQWNIRDGTKVTPVANQGQDEDEEEQRLWRSLIMERIMRSMNSALIALYIMTSPKM
PKQVYLEDVIERIILFGKFQLQNTIFPEFDPVYKIDPKAKDGYHGSLKAKRARATQVKHK
STINMFNKISDMIEKLSELVDIQELTDTTILQLSTLGVSPFFVENISEMQLNSMKLVTTI
FSKYEKHRQLILEDIFASLARLPSSKRNLRNYRLNSEESIQMVTALALQLIQCVIKLPSS
FTSTENEEEVPSTSSSRKGQKSKSAQNSNDVVIVTSFEKALRTGYNFLTVFLQKCTMKGE
EDYRPMFENFVQDLLSTVNKPEWPSSELLLSLLGKILVKQFSTKSVDMSLRVASLDYLGI
VASRLRKDAVSSHDNPESIDEIVTKVTSKESDDEEMHEDVKSSASGPEAEDQTQILQKAM
LDYLAYNSQSEPAYWYAHLFYIAQWYRDITVEADGLAKNSAKQKTDEEEDRAGEAMQNAE
QKKTFLLAQYESINRNASYRPPLSKLDYDGACLVARYLSSKRPFAQSFDVYLTQILRVLN
ESAVAVRTKAMKCLTAVVEADPGILARADMQKGVHYRFLDSSTSVREAAVELVGRFILIR
PELISQYYDMLSVRILDTGISVRKRVIKIFRDICLEHTDFTKIPEMCVKMIRRVNDEEGI
KKLVNEVFQSMWFSPINSREKDTNKLLTRVLNITDVVAACRDTGFEFFEQMLENLLKKDE
EGNINKSALTACRQIVDCLVENVLRLEEKSVDTETGGGSSQRLVACLSTLHLFSKIKPDL
MVKHATTLQPYLDIKCSTQGDHFVLHYVARILEMVVPLMDHPSETFLAQLEEDMMKLILK
HGMMVVESCISCLGAVVNCVSHNFPLVKDCFEKFFGVLVKLCMDHKEDPENPQLKARKPT
LLRSLFTVGLLCKYFDLDRDIQDIPADETIRERVFQVLMHFIMHEDELVREKGLCGLGFM
AIRHYDLMLGKDMRDLYYEYLGDEDSSDRLRIQVLKNLQNYLLEEEVRMHKADADWRKHA
KEEDLKEMGDIQSGMASTIMQVYLKHVLDSFFHTHSQVRLAALQVVVLVLQQGLVHPVQC
VPYLISMCTDTEKAIRVKADQQLQEIDKKYPGFIHMKALQGLKMSYKLQQLLQSNSTSCV
IRGHRDNEGNMISLNNFLYTVLRSNRSHRRAILLSLLNLFDDSAKISLAEQLYIADNLAF
FPYQTQDEPLFIINQIDIIVSVSGSNILQSFRERLRLSNTEAPRMNMVANVEGENEKENG
SLPHSVIEDEDEDDPDKLMEKLPEDIQPLLDICYLAQGCILLLHLKHHLKETYGFSDSKI
HNYSQTDAKTYDKPVQRKFIVTFNPETVITLLDNKTKNRTVNKRSRRSQKRHRNDSGEVT
SDSDGSSDEEDEEESSDDQKQRRKLIDEYLEFKDLMLSIDPPDEEEEGEENRSTGRQTPN
PAHGQTTQGSKSPRLPNPDGTGEEPTEMSVEVHEEMTERRVPPITIRTTHHSHHTPKTSS
RHHHLFTSDKKKIPVHSSTSSSSSKNLSKSFSKSISSKKKPKKRRKRYGSDSEDDSDDSD
FVL
NT seq
5952 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgatgtgcccagtgttcctataacaacactagcaggcattcacagtcttact
gaccttttaccagaactacccttgccaaccccaacatcatccacttcacacaataaaact
ttgcttcacaatgccaagctgaaagagacctcgaagcgcttgcttgcaagtcgagatacg
ggactgacacaacagttagtgggtgttctgcataaaacttcaacagagtacttagaattg
aaggattccactagtgatggagggatagatggaaaccccccagaattactgaaggcgatc
ctaagtcaggagcctgctacatttcaaggtagtcgacagtgctatgaaaatgggtcacag
aaagatgtatataatgtggggagtcaacattaccagaataatttgttaggagaagatcct
tccaagtttgaacatccttatggcaattacacaccaggcattgtgaatggggagcatccg
ggattgtccaatcagtacccagagtaccagggtcaaggggtcacaaaaaatctaggaaca
actcagggaagtttagcggagaacttgttccatggtgaaactgagaaccacggagtccac
agctctcatcacaaaaaaagactcaagaactcggaaccagttgttctcttggaaccactc
aataacttaccaccacatgcatcgggagatgcgtcgagttcagcatctacagaatcctat
ggtggagagaaaaagaagttcaagggttcccacccagtggtgcttctagaaccgctggat
aagcaagtacttcgtagacatacaaggagcaagacattgaaatcaattcagcatggaggc
tcagtgaaaactaaggaggacaagaagagaggaagaagacatcatgacagtggtgatgat
tatgatgacagacatggaaagcgaagacgtcgccacagtgacagtgatgcagactcccca
ccagatgtggcaagaaaaaagaagaaggacaagcgccacagacgcgtcaatcagcaggcc
ctgtctgtggaggaattactggagagtccgaccttcaaaaagttcagcagctctatggaa
tatgtcttggaagcatcagaagacactaactttggatcattggatcttaatgatgaagaa
gtggagtgcccaagggaaagtcttattgctaacaacattctgactgatctctgtggagaa
acagccaaactgaagtctttaggtgtcatgaaccaggtacctgctgacagactagtcaag
ttgttgacaatattgcagtggaatatacgagatggaacgaaagttacacctgtagccaac
caaggacaggatgaggatgaagaggaacagagactctggagaagtctgatcatggagcgg
atcatgagaagcatgaactcagccctcattgccctctatatcatgacctcgccgaaaatg
cctaaacaggtctatctggaggatgtcatcgagcggatcatcctgtttgggaaattccag
ctgcagaatacaatatttccagaatttgatccagtctataaaattgatcctaaagcaaaa
gatggttaccatggtagtctgaaggccaagagagcaagagccacacaagttaaacacaaa
tccaccatcaacatgtttaacaaaatctcggacatgattgaaaagttgtctgaacttgtg
gacatccaggagctgactgacacgaccattctacagttgtcaacattgggtgtctcacct
ttcttcgtggaaaacatcagtgaaatgcagctaaattccatgaagctcgttaccacaatt
ttttcaaagtatgagaaacatcgccagttaatacttgaagatatttttgctagtttagct
agactaccatcaagtaaaagaaatttgaggaattacaggttgaactctgaggagtccatt
cagatggtgaccgcactggctctacagctgattcagtgcgttatcaaacttccaagcagc
tttacatcaacagaaaatgaggaggaggtaccctcaacctcttcatctagaaagggccaa
aaatcaaaatcagcacagaattccaatgatgttgtcatagtaacctcctttgagaaagcc
ttaagaacaggctacaatttcctcacagtattcttgcaaaagtgcactatgaaaggtgag
gaggattacagaccaatgttcgagaactttgtccaggatctcttgtccactgtgaacaaa
cccgagtggccgtcctcagagctgcttcttagtttgctgggaaaaattctagtgaaacag
ttcagcactaagtcggtggatatgtctctcagggtagcttctctcgattatctcggcatt
gttgcatccaggttacggaaggatgctgtgtccagtcatgacaacccggagtccattgat
gaaatcgttacaaaagtgacctcaaaagaaagtgatgacgaagagatgcatgaagatgtc
aagtcctcggcatcagggccagaagctgaggatcaaacccagatcttacagaaagccatg
ttggattacttagcatataatagtcagagtgaaccagcgtattggtacgcccatctgttc
tacattgctcagtggtatagggatattacggttgaggccgatggtttggccaaaaattca
gcaaaacagaagacggatgaagaggaggacagggcgggtgaagctatgcagaacgctgaa
cagaaaaagacattcttactggcacagtatgagtccatcaacagaaatgcttcctacaga
ccaccactttccaaattggattatgacggtgcatgtcttgttgcaagatacctgtcatcc
aaaaggccatttgcccagagctttgatgtgtacttaacacagattttgagggtgcttaat
gaatctgctgtagcagtgagaaccaaggctatgaagtgtttaactgcggtggtagaggct
gatcccggcattctagcaagggccgacatgcagaagggtgttcattatcgcttccttgat
tcgtcaacctctgtccgagaggcggcggtggagttggtgggaagatttattcttatccgt
ccagaacttatttctcaatactatgatatgctctcggtccgtatcctggacactggtata
agtgttagaaagcgggtcatcaaaatttttcgtgatatttgtttggaacacacagacttc
accaagattccagaaatgtgtgtgaaaatgatccgacgagtcaatgatgaggaaggtatc
aagaaactggtaaatgaagtgtttcagagcatgtggttttcaccaatcaacagccgagag
aaagataccaacaaactcctaacaagggtgctcaacatcacggatgttgtggcagcttgt
cgagatacaggatttgaattctttgaacaaatgttagaaaatttacttaaaaaagatgag
gaagggaacataaacaagagtgctctgacagcgtgtagacagattgtggactgtttggtg
gagaacgtattgagattagaggagaagagtgtagacacagagacgggaggaggaagcagt
caaagactggtggcctgtctgtccactcttcatcttttcagtaagatcaaacccgaccta
atggtgaagcatgccaccacactacaaccgtacttggacatcaagtgcagtactcagggt
gaccactttgtgcttcactatgtggcacggatcctggagatggtggtgcctttgatggac
caccccagtgaaacattcctggcccagctcgaggaagacatgatgaagctcattcttaag
catggcatgatggttgtggagagttgtattagctgtcttggagctgtggtcaactgtgtc
agtcacaactttccactggtcaaggactgttttgaaaaattcttcggtgtcctagtgaag
ctctgtatggaccataaagaggaccccgagaatccccagctgaaggcgcggaaacccacc
ctgctacggtccctctttacagtgggtctgctctgtaaatactttgacttggacagggac
atacaggacataccagctgatgagaccatcagggagcgggttttccaagtcctgatgcat
tttattatgcatgaagatgaacttgtgagagaaaaaggactctgtggacttgggtttatg
gcaattcgtcactatgacctcatgttggggaaggatatgagggacttgtactatgaatac
ctgggagatgaggattcttcggatagactcaggatacaggtgttgaaaaaccttcagaac
tatttactggaagaggaagtccggatgcacaaagctgatgcagattggaggaagcatgct
aaagaagaggatctcaaagaaatgggagacattcagtcagggatggccagcaccattatg
caggtttacctgaagcatgttctggactcgtttttccacacccattcccaggtcaggctg
gccgcgttacaggtcgtggttctggtgctacaacagggcttggtccacccagtgcagtgt
gtgccctatttgatcagtatgtgtacagatacagagaaagctattagagtgaaggcagac
caacagctgcaggaaatagacaagaaatatccaggatttattcacatgaaggccttacag
ggtctgaagatgtcctataaactacagcagttgttacaatcaaacagtacaagctgtgtg
atccggggtcacagggacaatgagggaaacatgatcagcctcaacaacttcctgtacact
gtcttacgcagcaatcgttctcacaggcgtgccatacttctctccctgcttaacctcttt
gatgactccgcaaaaatctcattagctgaacagctttacatagccgacaatttagccttc
ttcccatatcagactcaggacgagccgttatttataataaaccagatcgacatcattgtg
tcagtgtcaggttccaacattctccagtccttcagagagcgtttacgtttgtcaaataca
gaagcaccacgcatgaacatggttgccaatgtggagggggaaaatgaaaaggagaatgga
tcattaccacattctgttattgaggatgaagatgaggatgatccagacaaactcatggag
aaacttccagaagatattcaaccattgttagatatatgttacttagcacaaggatgcata
cttctcctacaccttaaacaccacttgaaggagacgtatggattttctgacagcaaaatc
cataactactcacaaacggatgcaaaaacttacgataaaccagtgcaaagaaaattcata
gtgacgtttaatcctgagactgtgataactttgttagataataaaactaaaaataggacc
gtgaataaaagatctaggaggtcacaaaaacggcatcgtaatgattcaggggaggtaact
agtgacagtgacggttctagtgatgaggaagatgaagaggagagtagtgatgatcagaaa
caaagacgcaaactcattgacgaatatctagagtttaaagatctgatgttgagtatagac
ccccctgatgaagaggaggagggggaagagaatcgcagcactggtcgtcagacccccaac
ccagcccacgggcagaccactcaaggcagcaaatcaccccgactaccaaatcccgacgga
acgggggaagaacccacggagatgtcggtagaagtccatgaggagatgacagaacggcga
gtccctcccatcactattagaacaacacatcacagtcaccacacaccgaaaacctcctct
cgtcatcaccatctctttacttcagacaaaaagaaaattccagttcactcatcaacttca
tcgtcttcttccaaaaacttatcaaaatcattttccaagtctatatccagtaaaaagaag
ccaaagaaacgtcggaaacgttacggcagcgacagcgaggatgacagtgacgatagcgac
ttcgtgttatag
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integrated database retrieval system