Ostrea edulis (European flat oyster): 125670218
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Entry
125670218 CDS
T09123
Name
(RefSeq) exosome complex component RRP46-like
KO
K12590
exosome complex component RRP46
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125670218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125670218
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125670218
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125670218
NCBI-ProteinID:
XP_048761231
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Position
4:complement(4739037..4742841)
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AA seq
214 aa
AA seq
DB search
METSKLRQLSCTLGDLSRPDGDATVSQGDTCVTASVYGPGEVKVAKELLDKATIEVVYKP
KSGLPGCAEKLFERTIRNSCETVILGNLHPRSSISITVQEIQNRGSLLACCINSTCLALL
DAGVSMRYLMAAVTCAINDDGDIFMDPNMSQEQSARAVLTFVFENCNFEVVTVNAKGCYT
LDQFQQCLSRCRDASKSVFQFFKDSLSKKLSKSE
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atggagaccagcaaattaagacagttgtcatgtacactgggagatttatctcgtcccgat
ggagacgccaccgtttctcagggagacacatgtgtcactgcatcagtgtatggacctggc
gaggtaaaggtagccaaagaacttctagacaaagccaccatagaagtggtatacaaacct
aaatcaggtctgccaggctgtgcagagaaattgtttgagaggacaatcaggaactcttgc
gaaactgtcattcttggaaacctacatccaagatcatcaatttcaattactgtgcaggag
atccagaaccgtggctccctactagcctgttgtataaatagtacctgtttggctctattg
gatgcaggtgttagtatgaggtacctcatggcagcagtcacgtgtgcaataaatgacgat
ggtgatattttcatggaccctaacatgtcacaggaacagagtgcacgtgcagttttgaca
tttgtgtttgaaaactgtaactttgaagttgtaactgtcaatgccaaaggttgttacaca
ctagatcaatttcagcagtgtttgtcacgatgtagagatgctagcaagtctgtgtttcag
ttttttaaggattccttgtctaaaaaattgtccaaaagtgaatga
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