Ostrea edulis (European flat oyster): 125670233
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Entry
125670233 CDS
T09123
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125670233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125670233
Enzymes [BR:
oed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125670233
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125670233
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
PAM2
Motif
Other DBs
NCBI-GeneID:
125670233
NCBI-ProteinID:
XP_048761262
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All DBs
Position
4:50665967..50701571
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AA seq
598 aa
AA seq
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MEVTRKNFQSVLPEVEKAIAESDFLSVDTEFSGLHASSSYYISPLDTPEERYQKLRKGSC
DFLVFQVGLCTFCFNKENNKYEARPFNFYVFPRPYSRAAPDCRFMCQSSSIDFLASQNFD
FNKVFKEGIPYLTSTQESQLKDSLEEKHKQYNLFSSPAFVTPDSGAEAVTTKGPINIPEE
HKDFIEGICKTVQEFLDKEGEETLSLPPCNGFVRKLIYQTVKQRFQSGIHLAAKTDEKKQ
RFIVVTRIKSEDDMKIKEQEKQAAELAEVEGAVGFSKVIRMITHSEKLVVGHNMFMDVIH
LLHRFCSPLPENYLEFKALTTCIFPKLLDTKLMANTTPCKEFLPNTVLGDLLKHISCSPF
EKPEIVFPENFPQYKLDDSNLHEAAYDAFITGMCFIGMSNFLGNKKDPPVSNVSPDDSVV
KPFTNKLFLMRVPEIPYLDLAADDVLPNREHIFHVTFPKEWKAPDLYQLFSPFGNVNIQW
LDDTSAFVSLYKKEQSSSVIPALCKRDSKYKIITYELFKYGLPDKESKKRPHSTDSTEEE
SKKKKVLNVDAPVFVSRSRSATPPTPEENGNKIEEESLAPDSTSGKGSDQKMFEEPVW
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacaagaaagaattttcaatccgtccttccagaagtggagaaggctattgca
gaatcagattttcttagtgttgatacagaattttcaggtcttcatgcatccagctcctat
tacatatcaccactggacacacctgaagagagataccaaaagctaagaaagggctcatgt
gacttcctggtgtttcaagtgggactttgtacattttgttttaacaaagaaaacaataag
tatgaagcaagaccatttaatttttatgttttcccaagaccttattccagagcagcccct
gattgtagatttatgtgtcagagctcaagcattgattttctagcatctcaaaattttgac
ttcaacaaggttttcaaagaaggcataccatatttaacttccacacaggagagtcagttg
aaagattccttggaagaaaagcacaaacagtacaatcttttctcctccccagcctttgtt
acaccagacagtggggctgaagctgtgaccacaaagggacccattaatataccagaggaa
cacaaggattttatagagggcatctgcaaaactgttcaggagtttttggataaagaagga
gaagaaactctgtcattaccaccatgcaatggatttgtgaggaaactcatctaccagact
gtaaagcaaaggtttcagtctgggattcacttggcagctaaaacagatgaaaagaaacag
aggtttattgttgtcaccagaatcaaaagtgaggatgacatgaagataaaggagcaggaa
aaacaagcagcggaactggcagaagtagagggggctgtgggattttctaaagtcatcaga
atgattactcacagtgagaagctggtggttggacataatatgtttatggatgtcattcat
ctgttacataggttctgttctcctcttcctgagaattatctggaattcaaagcactaacg
acatgcatctttccaaaacttctggatacaaagctgatggcaaatacaacaccatgcaag
gagttcctgcctaatacagtgttaggggatctgttaaagcacattagttgctcaccattt
gaaaagccagaaatcgtgtttccagaaaattttccgcaatacaagttagatgatagcaat
ttacacgaggcagcatatgatgctttcattacaggaatgtgtttcataggaatgtctaat
tttctaggcaataaaaaagatcctcctgttagcaatgtttctcccgatgattctgtagta
aagcccttcacaaataaactgttcttaatgagagtgccggagattccttatttagatctg
gctgcagatgatgtattgccaaacagagagcacattttccatgttacgtttccaaaagaa
tggaaagcaccagatctgtaccagcttttttctccctttggaaatgtcaacattcagtgg
ttagatgatacatcagcctttgtgtcactttataaaaaggaacaatcttcttcagttatc
ccagccctttgcaagagggacagcaagtacaaaattataacatacgagttgtttaagtat
ggtctgccagacaaggaatcgaaaaagcgaccacattccaccgactccacggaggaagag
tccaagaagaaaaaagttctgaatgttgatgctcctgtgtttgtgtctcgatcaagatca
gctactccaccaacacctgaagaaaacggcaataaaattgaagaggaaagtttggcacca
gacagtacaagtggaaaaggtagtgatcagaaaatgtttgaagagcctgtctggtga
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