Ostrea edulis (European flat oyster): 125670698
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Entry
125670698 CDS
T09123
Name
(RefSeq) DNA polymerase beta-like
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125670698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oed03400
]
125670698
Enzymes [BR:
oed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
125670698
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
125670698
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
125670698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
HHH_8
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_5
HHH
Cdd1
HHH_3
NTP_transf_2
Phasin
5_3_exonuc
DUF4332
Motif
Other DBs
NCBI-GeneID:
125670698
NCBI-ProteinID:
XP_048761993
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All DBs
Position
4:74302474..74319470
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AA seq
340 aa
AA seq
DB search
MSKRKNATTDNPNKDFCDFLTELANYEKNVNRQMHKYNAYRKAVGVLAKHPTRIKSGAEA
KKLDGVGEKIAKKIDEYIDTGSLLKLEKIRADDTNVAINELAKVTGIGPAAAQKLVQEGI
TSIEELRKHPEKLNHHQQIGVKHFEDFEKRIPRAEMEQIQDTAFDEIRKLDDKFEARVCG
SFRRGAESSGDIDFLLTHPDYTSKTKGKTDLLHQVVKRLEKKGLITDTLSHGDFKYMGVC
RVLESGSSPSTSKERPFRRIDIRLIPHDQYYCALLYFTGSDVFNKNMRAHALEVGFTLNE
YTLRPIGSTGTPGEPLPVTSEEDIFDYLGMEYKQPYQRIS
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagagaaagaatgcaacgactgacaatcccaacaaggatttctgtgacttcctg
acggaattggcaaattatgagaaaaatgtcaacagacaaatgcacaaatataatgcctac
agaaaagcagtgggtgtcctggctaagcatccaacacggatcaagagtggagcagaggct
aagaaactggatggagtaggtgaaaaaattgcaaagaaaatagatgagtacattgacact
ggatccttattgaaattagaaaagataagagcagatgataccaatgtggctattaatgaa
ctggcaaaagttacaggaataggacctgctgcagctcagaagttggttcaggaggggatc
acctccatcgaagagttgagaaaacatccagaaaaacttaatcaccaccaacaaatagga
gtcaaacattttgaagactttgaaaagagaattcctcgagctgaaatggagcagattcag
gacactgcctttgatgagatcagaaagctggatgataaatttgaggcaagagtatgtggc
agctttagaagaggtgctgaatccagtggggacatagacttcctgctgactcacccggac
tacacttcaaaaaccaaaggaaagacagatctcctacatcaagttgtgaagagactggag
aagaaaggactgatcacagacacattgtctcatggggactttaagtacatgggagtttgt
cgggtgttagaatctggatccagtcctagtacctccaaagaacgaccatttagaaggatt
gacatcaggttgataccacatgaccagtactactgcgctttgctgtacttcacaggaagt
gatgtctttaacaagaacatgagggcccatgccctggaggtgggctttaccttgaatgag
tatacccttagacctatcggcagcaccgggacccctggtgagcccctcccagtgacatca
gaggaggacatctttgattatcttggaatggaatacaaacagccatatcagaggatttcg
taa
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