Ostrea edulis (European flat oyster): 125671165
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Entry
125671165 CDS
T09123
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X2
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125671165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125671165
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125671165
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125671165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
125671165
NCBI-ProteinID:
XP_048762642
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All DBs
Position
4:40106068..40134920
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AA seq
756 aa
AA seq
DB search
MADRRKLQGEIDRCLKKVTEGVESFEDIWQKVHNAANTNQKEKYEADLKREIKKLQRLRD
QIKTWCASSDIKDKRCLVDNRKLIETQMERFKVVERETKTKAYSKEGLGAAAKLNPLVKE
KSEMTNWLSQSIDNLNIQLDQFESSLEMLTTKKKKMDKDKQDRFEELKGHMERHKFHLKQ
LETILRMVDNDAIPLDQIKKIKDDVEYYVESNQEPDFEENEFLYDDLDLEDLGAQMLASS
PPNDDINMEALSSTPTSTNSSSPSPSPSLSINHSKDKSEDERKRHKSQNDEVLKLVPVIS
SPSSSNSSSSTVPVNNKVPSTPTKLFQGNTSTIESSNSNHRPNSTPPPLTGFSSVAASSQ
QNNSTGITIPRLPVSSTVWQGDISPMKFSYLSERFVKRDTKNQVNIMDHSALNSNSTVNS
STSSVTHSNSNSVSVTSVGNPSLVPAPSPLFTNNGTTVPFSNSMPMVVSNNVPTSNSYTS
QTTNGPNSHPPSKEVVMNGPVSAGASGLKGISCIDDSISDSMSSLKSIAQQAVVNAGLEN
QIPTPPPLSSESRLQFNSSTSLTTSLPTSSQVVSQSTSLSPSDQTSQQSQTTTIHLNPLL
GVAPLGPVPLSRENFYQLQMLEAAYHHLPHPSDSERQRSFLPRNPCPSPSFYPQLPPPHA
DSVEFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRFHTRYMMWFQRHEEPKTITE
DYEQGTYIYFDYEKWCQRKKEGFTFEYRYLEDRDLN
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggctgataggcggaagctacaaggtgaaattgacagatgcctcaaaaaagtaacggag
ggagtcgagtcatttgaagacatctggcaaaaggtccacaatgcagcaaacacaaatcaa
aaagaaaagtatgaagcagatctcaagagggagattaagaagctgcagcgtcttcgtgac
cagatcaaaacgtggtgtgcaagcagcgacatcaaagacaagaggtgtctggtggataat
aggaagctcattgaaacgcaaatggaaagatttaaagtggtggaaagagaaaccaaaaca
aaggcatattcaaaggaagggctcggggctgctgcaaaactcaacccattagttaaagaa
aagtcagaaatgactaattggctgtcacaatccattgacaatttgaatattcagctagat
cagtttgaaagtagtttggaaatgcttacaacaaagaagaagaagatggataaagataag
caagatcgatttgaggagctgaagggacatatggagaggcacaaatttcatctgaagcag
ttagaaaccattcttcgaatggtggataatgatgctattccattggatcagatcaagaaa
atcaaagatgatgttgagtattacgtggaatcgaaccaggagcctgactttgaggaaaat
gaatttctctatgacgacttagatctcgaagatctcggtgcacaaatgcttgcatcttca
ccaccgaatgatgacatcaatatggaagcattatcaagcacccctacttcaacaaattca
agttcaccctctcccagtcctagtctgagtataaatcattccaaagataaatcagaagat
gagaggaaaagacacaaatcacaaaacgatgaagtgctaaagttagtacctgtgatttct
tccccatcatcaagtaattcatcttcatccactgttcctgtcaacaacaaagttccatca
acacctacaaagttatttcaagggaatacctcgactatagaaagttcaaatagcaatcat
cgtccaaattccacgccaccaccactaacaggattctcctcagtagcagccagttcacaa
caaaataacagcacaggtataaccattccaaggttacctgtcagttccactgtgtggcag
ggggatatttcccctatgaagttttcttacttatctgagcgttttgttaaaagggatact
aaaaatcaagtgaacatcatggaccactcggctttaaatagtaactcaacagtgaacagc
agtacatcttctgtgacacactctaattcaaactctgtctcagtgacttctgtaggaaat
ccctctttagtgccagccccatcaccattgtttaccaataatggaacaacagtgcccttt
tcaaattcaatgccaatggttgtatcaaataatgtaccaacaagcaactcatacacaagt
caaacaacaaatgggcccaactcgcatccgccctccaaagaggtggtgatgaatggccca
gtgagtgcgggggcatcaggattaaaggggatcagttgcatagatgacagtatttcagat
tccatgtcatcattaaagtctatagcacaacaagctgtggtcaatgcaggtttagaaaat
cagataccaacacctccaccactgtcatcagagtccagattgcaatttaatagttccacg
tcattaacgacgtcattaccgacttcctcacaagtggtgtcacaaagcacgtctttatca
ccgagtgatcagacgtcgcaacaatcgcaaaccaccaccatacacctcaacccactacta
ggagtggcgcccttgggtccagtacctctcagcagagaaaacttttaccaattacagatg
ttagaagctgcatatcatcatttaccacacccttcagattccgagcgacagaggtctttt
ctcccccgaaacccttgtccatcgccctccttctacccacaactgcccccaccccatgca
gactcagttgagttttttcaacgactatccacagaaacactcttctttatattttattat
atggagggtactaaagctcaatatctggcagcaaaggctttgaaaaagcagtcatggcga
tttcatacaaggtacatgatgtggttccagcggcacgaagaaccaaagacaataacggag
gattatgaacagggcacatacatttattttgactacgagaagtggtgccaaaggaaaaaa
gaagggtttacatttgaataccggtatcttgaagacagagacttgaactaa
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