Ostrea edulis (European flat oyster): 125671761
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Entry
125671761 CDS
T09123
Name
(RefSeq) DIS3-like exonuclease 1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125671761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125671761
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
125671761
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
CSD2
Rrp44_S1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
125671761
NCBI-ProteinID:
XP_048763599
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All DBs
Position
4:14300486..14335887
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AA seq
1053 aa
AA seq
DB search
MVHDSKLEKSNKQLRLRSGHGRNVSVVREVYRREDVPCQSQLCLSDCQNATGDGGMGLLP
ADINHYLVPDCRVAREFLEVLENPVVTGIIFLQTVVHSVQHEGSRRLYNRLRNLVKDKRK
ASIIFHNEFQKYAYCERDQGETLADWQTRSTYTAAEWFYHHLAGQKPIIMVTLNKKAIEA
YGNKTQNVFVLSLEDYLRKFWQSHIPEVMELYESLTASLETKVKGKDYKGYLPMDILEAG
VKSGRFVQGHINVNRSNAGLEAFVKQKRSSKIDDADRDILIHGMSCRNRAVHGDLVVVEM
LPRSEWKGRSSVIKENQEGQVEEAEEDGVSDGNVMPTGRVVGISQRNWREYVASFASDEK
VSEKGGKVLVIPWDYRIPKIRISTRQVEKLKDQRIVVRIDSWEIDSQYPNGHFVKSLGAI
GDLEAEISAILLENTIHASEFSEAQMKELPVDTPENPWCIEDTELSKRRDLRSSHLIFSI
DPKGCEDVDDTLSVRYLDNGNLELGVHIADVTHFVRPGSLTDMEAQSRSTTVYLADRRYD
MLPGILSANLCSLISGVDRYAMSVIWELDKDFEVVNVWYGKTIIRSSYKLFYEMAQAMHD
GIAMSEIIENVPELQNLSKKEMKNRVDELRSAVVLLMKIARRLKARRVCGGALELESVEV
QVQLTETKSIENLTPKDHLEIHDTIAECMIFANHWVAKKIAEVFPNQTLLRHHPLPKNEQ
FENLKNCAKNKGFEVKTSSNKDLADTLDVCVDPNDPIVNRILRMLATQAMSVASYFSTGS
LSRDQFFHYGLALDYYTHFTSPIRRYADVLVHRQLMAAVQGQGSELLPGNQELDMLSEHI
NHQHRAAQNAQRDSQELFQYLYFKQKDADDVCCVADAIIFQLRANGLMVFVPRYGIRGPV
YLRNKDGQVIFVMNTGHSEWTNGNITKSEGSISINSVLGTQTFHLLDHITVKITLHSSRA
HASSLRLELISNEGYELDQKLSAADKSSKSQKQAIIQEVTAIAEEKRNQSSTEETSSRFQ
SLKEEFGQTPESVSLYTLFQSFKEQAVTPVAQQ
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgacagtaaactggagaagagcaataagcaactaagactgaggagtggtcac
ggaaggaacgtcagtgtagtgagggaggtgtacaggagagaggatgtcccttgtcagagc
caactctgtcttagtgactgtcaaaacgccacaggtgatggtggaatgggattgctgcca
gcagatatcaaccattaccttgtcccagactgtcgagtagccagagaattcctggaagtc
ttggagaacccagtagtaaccgggatcatattccttcaaacagtggttcattctgttcag
catgaaggaagtaggcgtttatacaacagattgagaaatcttgttaaagacaaacgaaaa
gcctccatcatattccacaatgaattccaaaagtatgcatactgtgagagagaccaagga
gaaacactggctgactggcagacaagaagtacatacacagcagctgagtggttttaccat
cacctggctggccagaaacccatcatcatggtcactctgaataaaaaggctatagaggca
tatggaaacaagacacagaatgtgtttgtcttatcgctggaggattatctgagaaaattc
tggcagtctcatataccagaggtcatggagctgtatgagtcattgactgcatcattggaa
acaaaggtcaaagggaaggactacaagggctatctcccaatggacatcctagaggctggt
gtaaagtcagggcggtttgtccagggtcatatcaacgtgaacaggagcaatgcaggacta
gaagcgtttgtcaaacagaaaaggtcttcaaagattgatgatgccgatagagatatcctg
atacatggaatgtcctgcagaaaccgagctgtccatggcgacttggttgtcgtggagatg
ttaccaaggtcagagtggaaaggaaggtcaagtgtcatcaaggaaaaccaggaaggtcag
gtggaggaagctgaggaggatggtgtctctgatggcaatgtaatgccaacaggtcgcgtg
gtagggatctcacagaggaactggagggagtatgtggcttcttttgcttctgatgagaaa
gttagtgaaaagggtggaaaggttttggtaattccatgggattatcgcattccaaagata
cgtatcagcacacggcaagttgagaaactgaaggaccagagaattgttgttcgcattgac
tcatgggaaatcgactcccagtatcctaatggacatttcgtaaaaagtcttggagccatt
ggagatttggaggcagaaatatcagcaattcttctggagaacacaatccatgcctcagaa
ttttctgaagcacagatgaaggaactccctgtggacacaccagagaacccctggtgtata
gaagacacagaattaagcaaacgtcgggatttacgctcttctcatttgattttctctatt
gaccccaaaggctgtgaggacgtggatgacacactctctgtaagatacttggacaatgga
aatcttgaactgggagttcacattgctgatgtaacacattttgtgagacctggctccctg
acagacatggaggcccagagtcggtccaccaccgtgtacctggctgaccgacgctacgac
atgttaccagggatacttagtgccaacctgtgttcgttgattagcggggtggataggtat
gccatgagtgttatatgggaactggacaaagactttgaggtggtcaacgtttggtatgga
aaaacaattatccgatcaagttataaactattttatgagatggcacaagcaatgcatgat
ggaatagcaatgtctgaaataatagaaaatgttcctgaacttcaaaatttgtctaaaaag
gagatgaaaaatagagttgatgagttgcggtctgctgtggtgttactgatgaagatagcg
agacgtctgaaggcaagacgtgtgtgtggaggtgctctggaacttgaaagtgttgaggtc
caagtccagctgactgagacgaagagcatagagaacctcactcctaaagatcacttggaa
atccatgacaccatagcagagtgtatgattttcgccaaccactgggtggcaaagaagatt
gcagaggtgttcccaaaccaaaccttgttaagacaccaccccttgccaaaaaatgagcaa
tttgaaaatctgaagaactgtgccaaaaacaagggttttgaagtcaaaacttcctcaaac
aaagatcttgcagacacacttgatgtctgtgtagatcccaacgaccccatagttaatagg
attctcagaatgctggctacacaggccatgtcggtggcatcctacttttcaactggttct
ctgtcacgggaccagtttttccactatggtttagctctggactactacacacattttact
tcccccatcaggagatatgcagatgtgctggtacacagacagttgatggcagccgtacag
gggcagggttcagaactattacctggtaatcaggaattggacatgctgtctgaacacatt
aatcaccaacacagggcagctcagaatgcacagagggattcccaggaactgttccagtac
ttgtatttcaaacaaaaagatgcagatgatgtgtgctgtgtggctgatgctattatattt
cagctcagagctaatggtctcatggtgtttgtcccaaggtatggcatacggggacctgtt
tatttacgcaacaaagatgggcaagttatatttgtgatgaatactggtcattcagagtgg
acaaatggcaacattacaaagtctgagggcagtattagtataaacagtgtactgggcacc
cagacatttcacttgctggatcacattacagtaaaaataacactgcacagctctcgagca
catgcttcctctcttagacttgaactgatctcaaatgagggctatgaattggatcaaaaa
ctgtctgcagctgataaatcctcaaagagccagaagcaggccataatacaggaggtgact
gccattgctgaggagaaacgcaatcagtcttccaccgaagaaaccagttccagatttcaa
tcgcttaaggaggagtttggtcagactcctgaaagtgtcagcttgtacacactgttccag
tcctttaaagaacaagctgtaactcctgttgcccagcaatga
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