Ostrea edulis (European flat oyster): 125672440
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Entry
125672440 CDS
T09123
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125672440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125672440
03019 Messenger RNA biogenesis [BR:
oed03019
]
125672440
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125672440
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125672440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCHC_3
zf-CCCH_4
zf-CCHC_2
zf-C3H1
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
125672440
NCBI-ProteinID:
XP_048764654
LinkDB
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Position
4:complement(28071402..28080958)
Genome browser
AA seq
283 aa
AA seq
DB search
MQELVASVSHIKFDLEVALEQQLGSQPLPFPGMDKSGAAICTFYLINVCSKGTACPYRHV
KGDRTVVCKHWLRGLCKKGDDCEFLHEFDMSKMPECYFFSKFGECNNKECPFLHIDPSAK
IKDCPWYDRGFCRHGPNCKNRHVRRVLCQCYLNGFCLDGPKCKYMHPSFDIPVFDQQTST
KKVNIVCHFCSEPGHKALTCPKMKTSDSSDKINVIQTTVDSTYQPGTGHNMHLPYKPPMG
QDNYIDPRRPLDQVTCFKCGEKGHYANKCPKGHLAFLASSSVS
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctggtagcatccgtttctcacataaagtttgatttggaagtagcccttgaa
caacagctggggtcacaaccactcccattccctggaatggataaatctggagcagcaatt
tgtacgttttacctcatcaatgtatgcagtaaaggcacagcctgcccatacagacatgtt
aaaggagacagaacagtagtgtgtaagcactggctcagaggactctgtaagaagggagat
gactgtgaatttcttcacgagtttgacatgagtaaaatgccagagtgctactttttctcc
aaatttggtgaatgtaacaacaaagagtgcccctttcttcacattgacccctctgccaaa
atcaaagattgcccctggtatgacagagggttttgtaggcatggtccaaactgtaaaaat
cgtcatgttagaagagtgctttgccaatgctatctgaacgggttttgcttagacggacca
aagtgtaaatacatgcatcccagttttgatatccctgtttttgatcagcaaacatccaca
aagaaagtcaacattgtctgtcatttttgctcagagcctggacacaaagcgctgacctgt
ccaaaaatgaaaacttcggattcttctgataaaatcaatgtcattcagaccacagtagac
agtacctaccagccagggacaggccataatatgcatctgccatacaaaccaccaatgggt
caagataactacattgacccaagacggccacttgaccaggtcacatgtttcaagtgcgga
gagaaagggcattatgcaaacaagtgtcccaaaggccatctagcatttttagcctcatct
tcagtgagctga
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