Ostrea edulis (European flat oyster): 125673589
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Entry
125673589 CDS
T09123
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH-like isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oed04121
]
125673589
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125673589
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125673589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
zf-RING_UBOX
zf-C3HC4
RNPP_C
F-box-like_2
Motif
Other DBs
NCBI-GeneID:
125673589
NCBI-ProteinID:
XP_056016719
LinkDB
All DBs
Position
3:41437325..41474911
Genome browser
AA seq
1734 aa
AA seq
DB search
MVKRKGNPQRASEEKRKCLTWSMDTPGATDQGGSMSVINDDDPCLLHEIQHSESNSTKQR
QRKEPDQHMWLFSQDLMHDMFNTILEECVMYIPIQSTRKFRGESFEVGTFKMQIINESFT
PPVPSLLPECMEYWLYIHKNQGQDLENKCYNMLYFETCEADENEPKEKCQRVFWCAKLDL
PLQVLQSLSECKFFQCVGNYDNTEGVLHVTVYGWEMLLSKPPFASEPVKSRIKSTALQNI
IGYFFDLKTPDYSHLPCVKSHDIEHLYAVVKERHDQTELEVTVNIQHEWLRPVLRPYQIR
GVKWMLQKERYGHQNERKSKDESILHPLYSEIKTKDSHTLYYNILGGSLLRERPLAVTAP
PGGLLADEMGLGKTVEVLSCIILHPRQNLDPPQRILTLSEYQELDGLECVSLEFNLEGVR
MVKTDTLNTDESLQSCEQSSASPSEDKDSSQMTIPDISHSESVDNLLNDSGRNSLVVSGM
NEVSIDCDRKHLNDCIDLISKGTDLCDSSENKNCDKDCSVEIEKIESELVSGADLCAEEN
GESGTGHLADSNSVKSSDDAQENGCEYKDDESLPPETELKNVEETTTLNHSYMYVGKSQS
PNHNDEQDPPQTEQVPPQNEQTLSTKRSKKSKRSKSKRWREAKDKPIKVKTAGRKKSVNK
FVEVIPEDRYQHKNIFDHTESVAPKNFFECICGMGDDSRETIHKKQTLHRVQCVKCGLRQ
HAECVSYDLQDPYRGQFKCPHCHVLSEPIKSGATLIISPAAISHQWMEEIQKHINRESSL
KVFVYNGVNKQKFVQPMTLASQDIVITSYETLRSEINYVDLPHSNSESGRKFRHPKRFMA
IPSPITAVEWWRICLDEAQMVECTTTKTAEMALRLSAVNRWCVTGTPIQKSIEDLYGLLL
FLGVDPYWVKQWWTKLLYEPFCYGKEEAMIDLVSKVMWRTAKHNVLDQINIPQQTEHVHW
LTFSPVEDHFYRRQYTISLQDSVKKLDKWRDPTVKLSSLDRATTNQLLGPLLRLRQACCH
PQAVKGEFLPLHLRRSAMTMEELLESLTKKTRTECEESHRLLIAAFNGLAGWYIINEQFV
DAVEMYREVLRSVEEHKDRLRTDDLQQLHAMYNLDEILQSKPEGIHPTLRDGQLKEQMEE
LKVKYLTKSRAVVHSVKDQLAPVTQSLQDLQREFRDGQEWWLEVIQLAAQRDIDDRLIVH
VKNDISNQQTSILSVSMAGAFHNVYGLELVMQQRMMALESAYEKLRQALKKVTGEPSQDL
INETVECCLRPVEEVKNSCSFCKIHLLFEDYEAKLFSFQERAFAVAEDTTEVTSGSRRQG
TWADSEMEKALKSILSFARSHSIDRDLVHCGQTHIEIMDKLKKEFKLLRVLWIESKAHVS
SFDELSMATTRLRLRLPDEPKPDNTQLNILEPNELDHHKLKLLSDRTISQNELRKKLGQL
LYLQNLAKAQFGIENGENPELCPICQKELGKEWCVLLCGHSYCLDCIRILCEQYSFGGRN
RVVKCAVCREKTYHSDISYVSTVKSDNDKEEMKVQGGGSDSRVEPNLGSHSTKVVGIVHC
LKQIKRDDPGAKVLLFSSWMDILNILVQALEENEISFKTLYSGSKFQPFYFQKNLAAFKS
DEAITVLLLPIHSGANGLNLIEATYVLLVEPVLNPAQELQAIGRVHRIGQTRPTQVHRFI
IRGTIEEKMYRMLKSAEATASSHVTEENCLTVGDLTSLLKEEREEEQGGSSQDI
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaaagaaaaggaaatcctcagagagcatcagaggagaaacggaaatgtttgaca
tggagcatggacactcccggtgcaacagatcagggaggatccatgtcagttataaatgat
gatgacccatgcctcttgcatgaaatacagcattctgagtctaactccacaaaacaaaga
caaaggaaggaaccagatcaacatatgtggctattttcacaagacttgatgcatgatatg
tttaatacaatcttggaagaatgtgtaatgtacataccaattcaaagcacaagaaaattt
aggggggaatcttttgaagttgggacctttaaaatgcaaatcatcaatgagagcttcacg
ccacctgtcccctcactgctaccagagtgcatggagtattggctgtacattcataaaaat
caaggacaggacctggaaaataaatgttataatatgctgtactttgaaacctgtgaagca
gatgaaaatgaaccaaaggagaaatgtcagagagtattttggtgtgctaaattggattta
cctttacaggtgctacagtcattgagtgagtgcaagtttttccagtgtgttggtaactat
gacaacacagagggtgtcctacatgtgacggtgtatgggtgggagatgttactgagcaaa
ccaccattcgccagtgaacctgtcaaatcaagaatcaaatccacagctcttcaaaatatt
attggatatttctttgatttgaaaaccccagactattcccaccttccctgtgtaaagagt
catgacatagaacatttgtatgctgtggtgaaggagaggcatgatcaaaccgagttggaa
gtgacagtgaacatacagcacgagtggctgagacctgtcctcagaccataccaaatcagg
ggagtgaagtggatgctgcagaaggaacgttatggtcatcagaatgagaggaaaagtaaa
gatgaatctattctccatccactctatagtgagattaaaaccaaggacagccatacattg
tactataacattctcggaggaagcctgttgagagaacggcctcttgctgttacagcgccc
cctggtgggctcctagcagatgaaatgggcctgggtaaaacagtggaggtattgtcatgc
atcatcctacacccacgacagaacctggatccacctcagagaatcctcacattgtcagaa
tatcaggaacttgacgggttagagtgtgtaagtttggagttcaatttggagggagtaaga
atggtaaaaactgacacactgaatactgatgaaagcctgcaaagttgtgaacaatccagt
gcaagcccaagcgaggacaaagattccagtcagatgactataccagacattagtcattct
gaatctgtggacaatctcttgaatgactcggggagaaattctttggtagtctctggaatg
aatgaagtcagtattgactgtgaccgtaagcatctaaatgactgcattgatcttatttcc
aaaggaacagatctttgcgacagtagtgaaaataaaaattgtgacaaagattgttctgtt
gagatagagaagattgaatcagagcttgtgagtggtgctgatttgtgtgccgaggaaaat
ggagagtctggaactggacatttggcagacagtaattctgtgaaaagttctgatgatgct
caagaaaatggttgtgaatataaagatgatgaaagccttccacctgaaactgaattaaaa
aatgttgaagaaacaacaacactgaaccattcatacatgtatgtgggaaaatctcaatct
cctaaccacaacgatgaacaagatccaccccagactgaacaagttccacctcagaatgaa
caaactctaagtacaaaaaggtcaaaaaagtccaaaaggtccaaatcaaaacgatggcgg
gaagccaaggataaaccaattaaagtcaagacagcagggagaaaaaagagtgtgaacaag
tttgtagaagtaattcctgaggacagataccaacataagaacatatttgatcacactgaa
tcagtggcacccaaaaacttctttgagtgtatctgtggtatgggagatgattcacgggag
accattcacaagaagcagacgctgcacagagttcagtgtgtgaaatgtggcctgcgtcaa
cacgcagaatgtgtgagttatgacctccaggatccctacagggggcagttcaaatgtccc
cactgccatgtgttgtcggaaccaattaaatctggggccacgttaattatatccccggca
gccattagtcaccagtggatggaggaaatccagaagcacattaatagggagtcctccctt
aaagtttttgtatataatggtgttaacaaacagaagtttgtccaaccaatgacgttagcc
agtcaggatattgtaatcacatcatatgaaacgctgcgcagtgaaatcaactacgtggac
ctgccccatagtaacagtgagagtggaagaaagtttaggcatcccaagcggttcatggcc
attccaagtcccattactgccgtggaatggtggaggatttgtcttgatgaagctcagatg
gtagagtgcacaacaacaaagacagctgaaatggccctgcgactgagtgctgtcaacaga
tggtgtgtaacaggaactccgattcagaaaagtatcgaagatttgtatggcttgctgttg
ttcttaggagtggatccatactgggtaaagcagtggtggacaaagcttctgtacgaaccc
ttctgttatgggaaggaggaagccatgattgatcttgtttccaaggtgatgtggcggaca
gccaaacacaatgttcttgaccagattaacattcctcagcagacagagcatgttcattgg
ttgacattttccccagtcgaggaccacttctacagaagacaatacaccatcagtcttcag
gactctgtgaagaaactagataaatggagagaccccactgtaaagctgagtagtttagac
agagctaccacaaatcagctgctgggtcccctgctgagacttcgacaggcttgttgtcac
ccccaggccgtcaaaggggagttccttcccctccatcttagaaggagtgccatgacaatg
gaggaattgttggagtccttaaccaagaaaacgcggacggaatgtgaggagagtcatagg
ttgctgatcgctgccttcaatggtctggctggctggtacatcattaacgaacagtttgtg
gatgctgtagagatgtacagggaagtactaaggtcagtggaggaacacaaagatcgtctc
cgtaccgacgacctccaacagcttcatgccatgtataacctggacgagatcctccagtcc
aaacctgaggggatccacccgaccctcagggacggtcaactcaaggaacagatggaggag
ctgaaagtgaaatacctgacaaaatccagggctgtggttcactctgtaaaggaccagctg
gcccctgtcacacagagtctgcaggatctgcagagggagtttagggatggtcaggaatgg
tggctggaggtgatccagttagcagcccagagagacattgatgaccgtctgattgtccat
gtgaaaaatgacattagtaatcaacagactagtattctgtcggtttccatggctggggcg
tttcataatgtatatggcttggagttggtgatgcagcaaagaatgatggccctggaatct
gcatatgagaaactgaggcaggccctgaagaaggtcacaggggaaccttctcaggatctt
atcaatgagacagtggagtgttgtctcaggcctgtggaggaggttaaaaatagttgttcg
ttctgtaaaatccatctcctgtttgaagattatgaagcaaagctgttttcatttcaagaa
agagcctttgctgttgctgaggacaccacggaagtcacctcaggatctcgccgacaggga
acatgggcagacagtgagatggagaaagcactcaaaagtatactcagctttgccaggagt
cactcaattgacagggatctcgttcactgtggacagacacatattgaaattatggacaaa
ctcaaaaaagaattcaagctactgagagtactgtggatcgagagtaaggcccacgtctca
tcatttgatgaactgagcatggctaccaccagactgaggctacgattaccagatgaacca
aaaccagacaacacacagctgaacattctggaaccaaatgagctggaccaccacaagttg
aagttgttgtcagacagaacaatcagtcaaaatgaattgaggaagaaactgggacaacta
ctttatctacagaacctggctaaggcacaatttggtatagagaatggtgaaaatcccgag
ctgtgtcctatttgtcaaaaggaacttgggaaagagtggtgtgttctgctctgtggccac
tcctactgcctggactgcatacgtattctgtgtgaacagtacagcttcgggggtcgtaat
cgcgtggttaaatgtgctgtctgtcgtgagaagacctaccacagtgacatatcttacgtc
agtaccgtcaagtccgacaacgataaagaggagatgaaagtacagggtggaggttctgac
tccagggtggagccaaacttgggaagccactctaccaaggttgtaggcattgtgcattgt
ctgaagcagataaagagggatgaccctggggccaaagttctgctcttctcctcatggatg
gatatattgaacatcctcgtacaggcattggaggaaaatgaaatatcattcaaaactctt
tattctggaagtaaatttcagcctttttattttcagaaaaatttggctgcctttaagtca
gatgaagccatcacagttttgcttcttccaattcattctggagcaaatggtctgaacctg
atagaggctacatacgtattactggtggaaccagttctgaatccggctcaggagctgcaa
gccattggacgagtacaccgtataggccaaaccagaccaacccaagtccacagatttatc
attcgtggtacaatagaggaaaagatgtaccgaatgttgaaatcggccgaggccactgcc
tccagtcatgtcacagaagaaaactgtctgacagtgggggatcttacttctctcctgaaa
gaggagcgggaggaagagcaaggaggaagttcgcaagacatatga
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integrated database retrieval system
