Ostrea edulis (European flat oyster): 125674137
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Entry
125674137 CDS
T09123
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04120
Ubiquitin mediated proteolysis
oed04137
Mitophagy - animal
oed04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125674137
04120 Ubiquitin mediated proteolysis
125674137
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125674137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125674137
04121 Ubiquitin system [BR:
oed04121
]
125674137
03029 Mitochondrial biogenesis [BR:
oed03029
]
125674137
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
125674137
Membrane trafficking [BR:
oed04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
125674137
Aggrephagy
Other aggrephagy associated proteins
125674137
Xenophagy
Other xenophagy associated proteins
125674137
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
125674137
Mitochondrial biogenesis [BR:
oed03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
125674137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
IBR_2
Rad60-SLD
ATP1G1_PLM_MAT8
IBR_1
OTU1_UBXL
Dsc3_N
Ubiquitin_5
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
125674137
NCBI-ProteinID:
XP_056016352
LinkDB
All DBs
Position
3:complement(27957479..27976871)
Genome browser
AA seq
472 aa
AA seq
DB search
MAKLFINVKFSSSSSCPLEISTDSSIRELKSLISGKTGIPVADVNLIFAGKLLQNGQLVS
ELGLGNHTVLHAFQQKRSPLEVRAHIGLNQLSPKGPASVVHPHQFYVYCKECAALQPGKL
RVVCEKCHQGKIILHQEPGSFDDVLQQGRIQGDCQNCGPQQKAKFYFKCTKDHSDLEELQ
GQCAVLRHIKPNRRNKECITCTDVQHPVLSFPCNKKHLICMECFLSYCVTQLNERRFVED
PGAGYSLPCPAGCPDSLIKDPHHFCLLGTEQYERYKSFAAEEYLLQNGGLMCPALGCGAG
LLLEELSQKVICPSCRFEFCRECRDAYHPEEECNTHHTAGASGQEVDNSLEQAMRAHNEL
ESMETIDKISKPCPKCRVKTERSAGCPDSLIKDPHHFCLLGTEQIKVADILFQYERHKAF
LIWNNVADILFEYQRCKSFGAEEYLLQNGGLMCPALGCGAGFLLEKLSQKVI
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagctatttattaacgtgaaattcagttcttcgtcgtcgtgtccgttagaaata
agcacagattcgtcaatcagagaactgaaaagcttgattagtggtaagacggggatacca
gtggcagatgtaaacctgatatttgcggggaagttgcttcagaacgggcagttagtcagc
gagctgggtctcggaaaccacactgtattgcatgcgtttcaacaaaagcgatcacctctg
gaagtcagggcacacatcggactaaatcaactcagccccaagggcccagccagtgttgtg
catccacaccagttctatgtgtattgtaaggaatgtgctgctctacaacctggaaaactg
agagtggtgtgtgaaaaatgtcaccaaggcaaaatcatcctccatcaggaacctggtagc
tttgacgacgtgcttcaacaaggcagaatacaaggagactgtcagaactgtggacctcaa
cagaaagcaaagttttactttaaatgtaccaaagatcacagtgaccttgaggagttacaa
ggtcagtgtgctgtgctgagacacattaaacctaacagacgcaacaaagagtgcatcacc
tgtactgatgtccaacatccagttttgagtttcccctgtaacaaaaaacatctgatttgc
atggaatgttttctgtcgtactgcgtcacacagctgaatgagcggcgatttgtggaggat
ccgggagctggatacagcttaccttgtccagctgggtgtcctgactcattgattaaagat
cctcaccatttttgtctgctgggaacagaacagtatgagagatacaaaagctttgcggcc
gaagagtacctgttacagaatgggggactgatgtgtcctgccctggggtgtggagcaggg
ttgctgctggaggaactgtcccagaaagtcatctgtcccagctgtaggtttgaattctgt
agggagtgtcgagacgcctatcatcctgaagaagaatgtaacacacatcacactgcaggg
gcatccggccaggaggtagataatagccttgagcaggccatgagagctcataatgaacta
gaatccatggaaaccattgacaaaatctccaaaccatgtcccaagtgtagagtaaagaca
gagagatcagctgggtgtcctgactcattgattaaagatcctcaccatttttgtctgctg
ggaacagagcagattaaagttgcagacattttgttccagtatgagagacacaaagctttt
ctgatatggaataatgttgcagacattttgtttgagtatcagagatgcaaaagctttggg
gcagaagagtacctgttacagaacgggggactgatgtgtcctgccctggggtgcggggca
gggttcctgctggagaaactgtcccagaaagtgatataa
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