Ostrea edulis (European flat oyster): 125674155
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Entry
125674155 CDS
T09123
Name
(RefSeq) DNA mismatch repair protein Msh2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125674155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oed03400
]
125674155
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125674155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_III
MutS_IV
MutS_I
MutS_II
DUF7736
Motif
Other DBs
NCBI-GeneID:
125674155
NCBI-ProteinID:
XP_056014067
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Position
3:complement(50586703..50830307)
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AA seq
661 aa
AA seq
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MDPFQDQGFIVAYRTLPEKPSTTIRVFDRAEYYTVHGQDALFVAKEVFKTVAVIKYLGTG
EKKLESITISKLNFESLAKELLLIRQYRVEIYKNKSGAKSNEWFIAYKASPGNLTQFEEI
LFGNTDISQSVGVLALKTGIENGEKVIGIGFADVMMRKLLVAEFVDNDQFSNLEALIIQM
GAKECVVGASEIQSGKLKQVLERSNVLITERKKGDFCSKDVVQDLNRLLKCSKGQHGNSS
TFSEMEKKLAMEAVSAVINYLELLSNEDYFGQFTLGSFDFQQFLKLDSAAVRALNLFPNT
SDGNKSQCIFGIMNRCRTVQGERLLAQWIKQPLVDVNRIKERQNIVNFFVNNTEPRQMVA
EDHLRGIPDFQRLSRKFQQRKASLQDCYKVYQALDKLPQLMETLEQRSKENCALVMEIFV
NPGKEILMDFSKFQEMVEETMDFHQVESHEFVIKPGFDEELQALAERISGLEDKIKAQLS
KVSRDLGVEANKVLKLENSTQLGYYFRVTRKEEKALRNNKNYTTLDTKNNGVRFHNSALK
QLNEDYLKAKMDYHEQQKNIVAEIISIAAGYCEAMIMLNELIAQLDVLVSFAVLAVSAPI
PFVCPSLLSMGSGKIRLTDARHPCLELQEDISFIPNDVRFDKGGIFLCDHVIFHSSVAIA
K
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggatccttttcaagaccaaggattcattgttgcatatagaactcttccagagaaacca
agcacaactataagagtttttgacagagcagaatattacactgttcatggacaagatgca
ttgtttgttgccaaggaggtcttcaagacagttgctgttataaaatatttaggtacaggg
gaaaagaaattagagtcaataaccattagcaagcttaactttgaatcacttgcaaaagag
ctgttgctgatacgacaatacagagtggagatctacaagaacaaatctggggctaagagc
aatgaatggttcatagcatataaggcatcacctgggaatctaactcagtttgaagagatt
ttgtttggaaatacagacatatctcagtctgttggtgtactagctctgaagactggaata
gaaaatggcgaaaaggttattggaattggctttgctgatgtcatgatgcgaaaattactg
gtggcagaatttgtggataatgaccaattttcaaacctagaggcactgattattcaaatg
ggagcaaaagaatgtgtagttggagcaagtgagatacaaagtggaaaactgaaacaagtg
ctggagagaagcaatgttctcataactgaaaggaagaaaggggatttttgtagcaaggat
gtggttcaagacttgaatcgtttactgaagtgcagcaaaggacagcatggaaacagttca
acattcagtgaaatggaaaagaaactggcaatggaggcagtatcagcagtgattaattat
cttgagcttttatcaaatgaggattactttggacaattcacccttggatcatttgacttt
caacagtttttgaagctagattctgctgcagtacgagcattaaatttgtttcccaacaca
tctgatggaaacaagagccagtgtatttttgggataatgaaccgatgcagaactgtgcaa
ggagaaagacttttggcgcagtggataaagcaacctcttgtggatgtcaatcgcattaag
gaacgtcaaaatattgtaaacttttttgtgaacaacactgaaccaagacaaatggttgca
gaggaccacttaagggggataccagactttcaaagattatcaagaaaatttcagcagaga
aaggcctcacttcaagactgttacaaagtttaccaggctcttgacaagttaccacagtta
atggaaacattagaacaacgcagcaaagaaaactgtgcactggtgatggagatctttgtg
aatccggggaaagaaattttgatggatttcagcaagttccaagaaatggtggaagaaacg
atggattttcatcaagtagaaagtcatgagtttgttatcaagccaggatttgatgaagaa
ttacaagcgcttgctgaaaggatcagtggcttagaagacaagataaaagctcaattaagc
aaggtttctagagacttaggagttgaagcaaacaaagtgctgaaattagagaacagtaca
caattaggatactatttcagagtaacaagaaaggaggaaaaggcactaagaaataataaa
aactacacaactctagacacaaaaaacaacggagtgcgctttcacaatagtgccttaaaa
cagctcaatgaagattacctgaaagccaagatggactatcatgaacagcagaaaaatata
gttgctgagataatttccatagcagctggatattgtgaggccatgatcatgttgaatgag
ttgatagctcaactagatgtgttagtcagttttgctgttctggcagtaagtgctcccata
ccatttgtttgtccaagtttgctgagcatgggcagtgggaaaattcgactgacggatgca
cgtcatccatgtttggaattgcaggaagacatttctttcattccaaatgatgtcaggttt
gataaaggtgggatttttctttgtgatcatgttatttttcattcatctgtagccatagcc
aaatag
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