Ostrea edulis (European flat oyster): 125675131
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Entry
125675131 CDS
T09123
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125675131
09124 Replication and repair
03420 Nucleotide excision repair
125675131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125675131
03400 DNA repair and recombination proteins [BR:
oed03400
]
125675131
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125675131
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125675131
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125675131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
125675131
NCBI-ProteinID:
XP_048768587
LinkDB
All DBs
Position
3:74447340..74471357
Genome browser
AA seq
779 aa
AA seq
DB search
MGKKDKKDREERKAKKSKLEYEEYAEEESVEAEPSKGEVPDAATRSVDDAGKEDEFGAKD
YRPELALKADHSSRPLFVAPNGHIFLESFSPVYRHAHDFLIAISEPVCRPEFVQEYKLTA
YSLYAAVSVGLETNDIIEYLRRLCKTTLPKGIEEFIKLCTLSYGKVKLVLKHNKYYVESQ
HPDVIQILLKDPVIQECRFRSDDTDLLTGQVSSKSALQLAKPGPSTSAEGEDRQEEATGE
EVPDDIYAYYDKMDKEEDEEEDTKTVSFEVKQEKIEVIQKRCIELEYPLLAEYDFKNDTV
NPDINIDLKPSTILRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKRTI
CLATSGVAVEQWKQQFKLWSTADDSIICRFTSDAKDKPIGSSILISTYSMLAHSTKRSWE
AEKVMEWMQSQEWGIMILDEVQTIPARMFRRVLTIVNAHCKLGLTATLVREDDKIADLNF
LIGPKLYEANWMELQNNGYIARVQCAEVWCPMAPEFYREYLNTKSQKKLLLSVVNPNKFR
ACQFLIRYHERRNDKIIVFSDNVFALKSYAIKLNKPYLYGPTSQGERMQILQNFVHNPKV
NTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRMGRILRAKKGAVAEEYNAFFYSL
VSQDTMEMHFSLKRQRFLVNQGYAYKVITKLAGMEEENLGYDTKEEQAQLLQKVCAATEQ
DAEEERLAGEGGFSQVSRRVGSMSSMSGADDSLYMEFKGKKLAASSGHAHPLFKRFRKI
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaaagacaagaaagatcgagaagaaagaaaagccaagaagtcaaagttagag
tatgaagaatatgcagaagaggagtcagtggaagccgagccatcaaaaggtgaagttcca
gatgcagccactcgatcagttgatgatgcagggaaagaggatgagtttggggcgaaagac
tacagaccggaactagctctcaaagctgaccacagctcaaggccactgtttgtggctccc
aatggacacatatttctggagtctttttcaccagtttacagacatgcacacgacttcttg
atcgccatctcagagcccgtgtgtcgcccggagtttgtacaggagtacaagctgacagct
tactccctctacgctgctgtctcagttggcttggaaaccaatgacatcatagaatattta
aggcgactctgtaaaacaactctacccaaagggatagaggagttcatcaagctatgtacc
ctgagttatgggaaggtgaaactggtgcttaaacacaacaaatactacgtggaaagtcaa
cacccggatgtgatccagatattgctgaaggaccctgtgatacaagagtgtagatttcgc
tccgatgacaccgacctacttacaggccaggtgtcctctaaatctgcccttcagctggcc
aagccaggacccagtacgtcagctgaaggggaggacagacaggaagaggcgactggagag
gaagtgccggacgatatctatgcttactatgataaaatggacaaagaagaagatgaggaa
gaggataccaaaaccgtgtcatttgaggtcaagcaagagaagatcgaggtcatacagaaa
agatgtatagagctggaatatccgctgttggcagaatatgacttcaagaatgatacagtc
aatcccgacatcaacatagatctgaagccgtctacgatcttacgaccataccaggagaag
agtctcaggaagatgttcggaaacggtcgagctcggtccggtgtcatcgtattgccctgt
ggtgccggaaagactttggtgggtgtgacagcggcgtgtactgtcaggaagaggacgatt
tgtctagccacatcaggggtcgctgtagagcagtggaaacaacagtttaagttgtggtcc
acagcagatgacagtatcatatgcagatttacttctgatgccaaggacaaaccaatagga
tcttccatcctaatcagtacctactcaatgttggcccattccaccaaacgttcttgggag
gcagaaaaagtcatggagtggatgcagagtcaggaatggggaatcatgattctggacgag
gtacagacaattccagctcgcatgtttaggcgtgttctgacgatcgtgaatgctcactgt
aagcttgggctgactgctacactggtccgagaggatgataaaattgctgacctgaatttc
ctgattggaccgaagctgtacgaggcaaattggatggaactacagaataatgggtacatc
gcccgagtgcagtgtgcagaggtttggtgccctatggctccagaattttacagagagtat
ctcaataccaaatcacaaaagaaactgttgttgtcagtcgtgaatccaaacaaatttcga
gcttgtcagttcctgatcagataccacgagagacgtaacgacaaaatcatagtgttctcg
gataatgtgtttgccctgaaaagttatgccattaagctgaataagccatatttgtatgga
cccacctcacaaggggagagaatgcagattttacagaactttgtccataatccaaaagtc
aacaccatctttgtatccaaggttgctgatacttcctttgacctcccagaagccaatgtg
ctaattcagatctcggcccacggtggctcacgtaggcaggaggcccagaggatgggaaga
attctaagggctaaaaagggcgctgtagcggaggagtacaacgccttcttttactccctg
gtttcccaggatacaatggagatgcacttctctctgaagagacagaggtttctagtcaac
cagggctatgcctacaaagtcatcaccaaactcgccggcatggaggaagaaaatctgggt
tatgatacaaaagaggagcaagctcagctgttacagaaggtgtgtgctgccacggaacag
gacgctgaggaggaaagactggccggagaggggggattctcacaggttagcaggagggtg
ggtagtatgagttctatgtcgggagcagacgacagcctttatatggaattcaagggcaag
aaactggcagcctcaagcggccatgctcaccctctgtttaaaaggttcagaaaaatctga
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