Ostrea edulis (European flat oyster): 125675455
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Entry
125675455 CDS
T09123
Name
(RefSeq) exosome complex component RRP41-like
KO
K11600
exosome complex component RRP41
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125675455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125675455
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
125675455
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
125675455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
125675455
NCBI-ProteinID:
XP_048769065
LinkDB
All DBs
Position
1:89449353..89456414
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AA seq
245 aa
AA seq
DB search
MAGLELLSDQGFRIDGRHPNELRKIQCKLGVFSQADGSAYIEHGNTKVLAAVYGPHEIRG
SRSKLLQDKVLVNCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTKLHPRSQ
IDIFVEVLQSDGGNYCASVNAATLAVIDAGIPMKDFVCACSASYLGDSPIVDINYMEESS
GSPEIIVSVLPKSEQIVFLEMNGRLHEDNLSKVVDMAVKGCKDVYGVLDRTVREHVSEVG
TSLET
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggccggactagaactactttcagatcaaggatttcgaatagatggaaggcacccgaac
gagttacggaaaatccaatgtaagctgggagtttttagtcaagccgatggttcagcctac
atagaacatggaaatacgaaggtgttagctgctgtttacgggccacatgagatcagagga
agccgcagtaaacttcttcaggataaagtcctggtgaattgtcaatacagcatggcaaca
ttcagcaccagtgaaagaaagaggcgacccagaggagacagaaaatctcaggaaatgaca
atgcacctacagcaaacattcaatgctgccatcttaaccaaactccaccccaggtctcag
attgatatctttgttgaggtgttgcagtctgatggaggaaattattgtgccagtgtgaat
gctgctactttagccgtcatcgacgcaggaatccccatgaaggactttgtgtgtgcatgc
tccgcgagttaccttggtgacagcccaattgttgacatcaattatatggaagaatcctca
ggaagtccagaaatcattgtgtctgttctcccaaagtcagagcagattgttttcctggaa
atgaatggtcgtcttcatgaagacaacttgagtaaagtagtggacatggcggtcaaaggg
tgcaaagacgtgtatggggtgttggacaggaccgtgagggaacacgttagtgaagtgggc
acctcgctggaaacatga
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integrated database retrieval system
