Ostrea edulis (European flat oyster): 125675883
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Entry
125675883 CDS
T09123
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125675883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125675883
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125675883
BRITE hierarchy
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GFIT
Motif
Pfam:
Suf
FAD_binding_7
DNA_photolyase
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
PRP6_TPR
NRDE-2
Motif
Other DBs
NCBI-GeneID:
125675883
NCBI-ProteinID:
XP_048769678
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All DBs
Position
3:complement(64457299..64510488)
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AA seq
1255 aa
AA seq
DB search
MSAGSHAGGVGGVLPPEQIGYIPDKLKKAEKRIEAFPYDTEAWSVLIRDAQMKPIEVARQ
VYERLVTQFPNAGKYWRIYIEQELKAKNFERVEKLFQRCLVKILSIDLWKLYLNYIKDTK
GKLPSYREKMAQAYDFALDKMGMDIMSYQIWLDYINFLKSVEAVGSYAENQQITAVRKVF
QRGVVNPMINIEGLWKDYCQYEQNINPLIAKKMTEDRGREYINARRVAKEYEAVTRGLNK
NLPSVPPQNNPDEAQQVDLWKKYITWEKSNPLRTEDHALITKRVMFAYEQCLLCLGHHPD
IWYEAASYLEQSSKILSEKGDQNAGKMFADEAGSVYERAITTLMKNNMLVYFAYADFEES
RMKYEKVHGIYKKLLVVQEIDPTLAFIQYMKFARRAEGIKSARQIFKMAREENRTRYQVF
VAAALMEYYCSKEKTVALKIFELGLKKYGGIPEYLLCYMDFMSHLNEDNNTRVLYERVLS
SGQVLPEKSIEIWSRFLAFESEVGDLASIQKVEKRRAQAIEKVQEFEGKDTALLIDRYKY
LDLYPCTTTELKAVGYFDLARQQVVTLPSTSVTKVVLEEEESKNKPQYPKPDVEQMIPFK
PRQIVPVGAHPIPGGEFPPPPAAANLISQLPPPDCFHGPFVIMDKFIEHFNKLVLPEAPV
GTENGIDGTFKLDPGTQLSIDFALGRKRKVTEGEESDDEGKHVVHWFRKGLRLHDNPSLL
EAVTGTATYRCVYILDPWFAGSSQVGINKWRFLLQCLEDLDTSLRKLNSRLFVLRGQPTD
LFPKIFKEWNITTLSFEEDPEPFGKERDSAIQMLAKEAGVEVIMKTSHTLYDLQKIISIN
GGTPPLTYKRFQSVLSKLDPPKEPEETINSAILENKNTPISEDHDDKYGVPTLEELGFET
EGLGPAVFHGGETEALTRLERHLERKAWVASFERPKMSQQSLFPSQNVLSPYLRFGCLSA
RLFYWKLQDLYRKVKKRKDPPLSLHGQLLWREFFYTVATNNPNFDRMKDNPLCVQIPWDK
NPEALAKWAEGKTGFPWIDAIMMQLRQTGWIHNLARHSVACFLTRGDLWISWEEGMKVFE
ELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVGFGKRADPTGDFIRMYLPVLKGYPAK
YIYEPWTAPESVQRAAKCIIGKDYPVPMVNHAEVSKLNIGRMKQVYQQLAIYASIASVPK
QIHSGEPYSKHTKAMNSGNHPSRVALMDSSEHGSHGNHSQMTGEDKESQQQYLSV
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaggttcccacgctggtggcgtcggtggcgtgctgccgccagagcaaattggg
tatattcctgacaaattaaagaaagcagagaaacgcattgaagcatttccatatgacacg
gaggcatggagtgttttgattcgagatgcccagatgaaaccaatagaggttgccaggcaa
gtgtacgagagactagtaacccaatttcccaatgctggcaaatactggaggatttatata
gaacaagagttaaaagcgaagaattttgagagagtggaaaagctgttccagaggtgcctt
gtcaaaattctgagcatagatctgtggaaactttatctaaattatataaaggacacgaaa
ggaaaactgccatcttatagagaaaagatggctcaggcatatgactttgctttagacaaa
atgggaatggacatcatgtcttatcaaatctggctggactacatcaacttcctgaaatca
gtagaagcggtgggttcgtatgcagaaaatcagcagataacagctgttcgtaaggtattc
cagagaggtgttgtgaaccctatgattaacatagagggactctggaaggactattgccag
tatgagcagaatataaatccactgattgccaaaaaaatgacggaagaccgaggacgggaa
tatatcaatgctagaagggttgccaaggagtacgaggctgttacacggggtctgaataag
aatcttccatctgtacccccacagaataacccagacgaggcccagcaggtggatctgtgg
aaaaaatacatcacctgggagaaaagtaaccccctgaggacagaagaccacgccctgatc
accaagcgagtgatgtttgcctatgagcaatgtctgctgtgcctgggacaccatcctgac
atctggtatgaggcagcctcttacttggaacagtccagcaaaatcctgtcagaaaaagga
gaccagaatgctgggaaaatgttcgcagatgaagctgggtctgtgtatgaacgagccatt
accacactaatgaagaataatatgctggtttactttgcatatgcagactttgaagagagt
aggatgaagtacgagaaggttcatggtatatataaaaaactacttgttgttcaagaaata
gacccgacactggcattcatccagtatatgaagtttgccagacgagctgagggaataaag
tcagccagacaaatttttaaaatggctcgcgaggagaatcggactcgataccaggtgttt
gtagccgcagcactgatggagtattactgtagcaaggaaaagacagtcgcattgaagata
tttgagcttggattgaagaaatatggagggattccagagtatctgctgtgttacatggac
ttcatgtcacatttaaatgaggacaataatacccgagtcttgtatgagcgagttttgtcc
tcaggacaggtgctccctgagaaatctatagagatctggagccgatttctggcctttgag
tcggaggttggggacctggcgagtatacagaaagtggagaagaggagagcccaggctatt
gaaaaggttcaagagtttgaagggaaagatacagccttgttaatagacagatacaaatac
ctagatctttacccatgtactaccacagagctgaaagcagttggatactttgatttagcc
aggcagcaggtagtgactcttccctccacatctgtgactaaggttgttcttgaagaggag
gagagtaaaaataaaccacagtatcccaaaccagacgtagagcagatgatacccttcaaa
cccaggcagattgttcctgttggagcccatcccattcctggaggggaattcccacctcct
cctgctgcagctaatctgatatcacagttacctccccctgactgtttccacggcccattc
gtcatcatggataagtttatagaacatttcaacaagctagtactaccagaagctccagtt
gggacggagaatggtattgatggcacatttaaactagacccaggaacgcagctctccatt
gacttcgctttaggtaggaaacggaaagtcaccgaaggtgaagagagtgacgatgaggga
aagcacgtcgtgcactggtttcgcaaaggacttcgtttacacgacaatccatcgcttctt
gaggcagtgacagggacggccacatatcgctgtgtttacatattggacccgtggttcgct
ggctcgtcacaagttggaatcaacaagtggcggtttttgctgcagtgcctagaagacttg
gatacttctcttcggaaattgaactccagattatttgtattaagaggacaacccacagat
ttgtttcctaagatattcaaggaatggaatattacgactctttcattcgaggaggaccca
gaaccttttggaaaggaaagagacagtgctatacagatgttggccaaggaggctggggtt
gaggtcataatgaaaacttctcatacactctatgaccttcagaaaataatttcaatcaac
ggaggcactcctcccttaacgtacaaacgtttccagtcagttctatcaaaactagaccct
cctaaagagccggaggaaaccattaacagcgctatactggaaaataagaatactccaatc
tcagaagaccatgatgacaaatatggggttcccacattagaagaattaggttttgagaca
gaagggttagggcctgctgttttccatggtggggaaactgaggctttgaccaggcttgag
aggcacctggaacgcaaggcctgggtagccagctttgaacgacctaagatgtcccaacag
tctctgtttcctagtcagaatgtgctgagtccgtacctgagattcggttgtctctctgct
cgtctcttctactggaaacttcaagatttatacagaaaggttaaaaagaggaaagaccct
ccattgtcactgcatggacagctcttatggagagagttcttttacacagtggcgaccaat
aaccctaattttgaccggatgaaagataatccattatgtgtgcaaattccatgggataaa
aatcctgaagcattagcaaaatgggcagagggtaaaactggatttccatggattgatgct
ataatgatgcaattaaggcagactgggtggatccataacttagctagacattctgtggct
tgttttttgactcgtggggatctctggatctcatgggaagaaggaatgaaggtgtttgag
gagctgttgttggatgcggactggagcgtcaatgctggcatgtggatgtggctgtcctgt
agctccttctttcagcagtttttccactgctactgtcccgtgggatttggcaagcgagct
gatccgactggagattttatcagaatgtacttgccagttctgaaaggctaccctgccaag
tatatttacgaaccctggacagccccagaaagtgtacagcgggcagcaaaatgtatcata
ggcaaagattatcctgtgcctatggtgaatcatgccgaggtcagcaaactcaacattggg
cggatgaagcaggtgtaccagcagctggccatctatgcctccatagcttcagttcccaaa
caaatccactccggggaaccatacagcaagcacacaaaagcaatgaattctgggaaccat
ccctcacgagtagctttaatggacagctctgaacatggcagtcatggtaaccatagtcag
atgactggagaagacaaggagtcccaacagcagtatttatcagtatag
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