Ostrea edulis (European flat oyster): 125678044
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Entry
125678044 CDS
T09123
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03040
Spliceosome
oed04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125678044
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125678044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oed03041
]
125678044
04121 Ubiquitin system [BR:
oed04121
]
125678044
03400 DNA repair and recombination proteins [BR:
oed03400
]
125678044
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125678044
Spliceosome [BR:
oed03041
]
Complex B
Other components
Prp19 complex
125678044
Complex C
Prp19-CDC5 complex
125678044
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
U-box type E3
125678044
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
125678044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
U-box
Beta-prop_DCAF4
Beta-prop_Nup120_160
eIF2A
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
zf-Nse
ATG16
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
125678044
NCBI-ProteinID:
XP_048772113
LinkDB
All DBs
Position
1:complement(84151453..84165251)
Genome browser
AA seq
509 aa
AA seq
DB search
MALCCAISNEVPEQAVISPVSGHIYERRLIEKYIKENGSDPMNGEKLGIEMLVDVKASPL
VKPRPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGITAGAYVAPAPQPTYGAEAGPESAIQPMEETGMSDEVLQKL
QDKATLLTAERKKRGKTVPEGLVTTEDIKSYKQLASHTGLHSASVPGILALDICLKDTSK
IVTGGNDKNAVVFNKDTEQVMAILKGHSKKVTSVIYHPEDELVFTASPDATIRVWGVETA
QCGQVIRAHDAPVTGISLHATGDYLLSSSTDMHWAFSDIRQGRVLTKVSDPSSQHALTCA
QFHPDGLIFGTGTEDSMIKIWDLKGRLNVANFPGHQGPITSIAFSENGYYLATSAEDSVV
KLWDLRKLKNFKTLQLTDKYEVRSLAFDQSGTYLSVAGSDVRVYLCKQWQELISFNDHTA
MATGVRFGHNATFVASASMDRSVKFFGMS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgctgtgcaatcagtaatgaggttcctgagcaggcagtcatctctccggtg
tcaggacatatttatgaacgacgtctgattgagaagtacatcaaagaaaatggctctgat
ccaatgaatggggaaaagctggggattgaaatgctggttgatgtgaaggcatcaccactt
gtaaaacccagacctccctctgcaacaagtattccagcaatactcaaagctttgcaagat
gaatgggatgctgtcatgttacacagtttcactttgagacagcaactgcagacagccaga
caagaattgtcccatgctctttatcaacatgatgccgcgtgtcgtgtgattgcccgtctc
actaaagaagtcacagctgcaagagaggctttggccactctcaagccccaggcaggcatc
acagctggtgcctatgtggctcccgctccacaaccgacatacggtgcagaagctggacca
gagtctgccattcaaccaatggaggagaccggcatgagtgatgaagtactacagaagttg
caagacaaagccacacttcttacagccgagaggaaaaagagaggtaaaaccgtgccagag
ggactggtaactacagaagacatcaaatcctataaacagctggcctcccatactggatta
catagtgccagtgtaccgggaatattggcgctggacatttgtttgaaggacacatccaaa
attgttacaggtggcaatgataaaaatgcagtggtattcaacaaggacactgagcaggtc
atggccattctcaaaggtcactccaagaaggttacaagtgttatctatcacccagaagat
gaacttgtgtttactgcgtcccctgatgccaccattcgtgtctggggagtggagactgcc
cagtgtggccaggtgatcagagctcacgacgccccagtaacaggaatcagtctgcacgcc
acgggcgattacttgcttagctcatccactgacatgcactgggctttctctgacatcaga
caaggacgagtattgaccaaagttagtgatccctcctctcagcatgctctcacctgcgca
cagtttcaccctgatggacttatttttggaaccggtactgaagactctatgatcaagatt
tgggatttgaaggggagactgaatgtggctaacttccctggtcaccagggcccaattacc
agcattgctttctcagaaaatggatactacttggcaacatcagctgaagactctgtcgtc
aaattgtgggatttgaggaaactgaaaaatttcaagacccttcagttgacagacaaatat
gaggtgaggtcccttgcttttgaccagagtggaacttacttaagtgtggcaggatcagat
gtcagagtgtacctttgcaagcagtggcaggagttgatttctttcaacgaccacacagcc
atggccactggagtaaggtttggtcacaacgccacatttgtcgcttcagcaagcatggat
agatctgtcaaattctttggaatgtcttga
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