KEGG   Ostrea edulis (European flat oyster): 125678044
Entry
125678044         CDS       T09123                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03040  Spliceosome
oed04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125678044
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    125678044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oed03041]
    125678044
   04121 Ubiquitin system [BR:oed04121]
    125678044
   03400 DNA repair and recombination proteins [BR:oed03400]
    125678044
Enzymes [BR:oed01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125678044
Spliceosome [BR:oed03041]
 Complex B
  Other components
   Prp19 complex
    125678044
 Complex C
   Prp19-CDC5 complex
    125678044
Ubiquitin system [BR:oed04121]
 Ubiquitin ligases (E3)
  U-box type E3
   125678044
DNA repair and recombination proteins [BR:oed03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    125678044
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st Prp19 WD40_CDC20-Fz WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_IFT122_1st U-box Beta-prop_DCAF4 Beta-prop_Nup120_160 eIF2A Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N zf-Nse ATG16 PUMA_CC
Other DBs
NCBI-GeneID: 125678044
NCBI-ProteinID: XP_048772113
LinkDB
Position
1:complement(84151453..84165251)
AA seq 509 aa
MALCCAISNEVPEQAVISPVSGHIYERRLIEKYIKENGSDPMNGEKLGIEMLVDVKASPL
VKPRPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGITAGAYVAPAPQPTYGAEAGPESAIQPMEETGMSDEVLQKL
QDKATLLTAERKKRGKTVPEGLVTTEDIKSYKQLASHTGLHSASVPGILALDICLKDTSK
IVTGGNDKNAVVFNKDTEQVMAILKGHSKKVTSVIYHPEDELVFTASPDATIRVWGVETA
QCGQVIRAHDAPVTGISLHATGDYLLSSSTDMHWAFSDIRQGRVLTKVSDPSSQHALTCA
QFHPDGLIFGTGTEDSMIKIWDLKGRLNVANFPGHQGPITSIAFSENGYYLATSAEDSVV
KLWDLRKLKNFKTLQLTDKYEVRSLAFDQSGTYLSVAGSDVRVYLCKQWQELISFNDHTA
MATGVRFGHNATFVASASMDRSVKFFGMS
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggcgctgtgctgtgcaatcagtaatgaggttcctgagcaggcagtcatctctccggtg
tcaggacatatttatgaacgacgtctgattgagaagtacatcaaagaaaatggctctgat
ccaatgaatggggaaaagctggggattgaaatgctggttgatgtgaaggcatcaccactt
gtaaaacccagacctccctctgcaacaagtattccagcaatactcaaagctttgcaagat
gaatgggatgctgtcatgttacacagtttcactttgagacagcaactgcagacagccaga
caagaattgtcccatgctctttatcaacatgatgccgcgtgtcgtgtgattgcccgtctc
actaaagaagtcacagctgcaagagaggctttggccactctcaagccccaggcaggcatc
acagctggtgcctatgtggctcccgctccacaaccgacatacggtgcagaagctggacca
gagtctgccattcaaccaatggaggagaccggcatgagtgatgaagtactacagaagttg
caagacaaagccacacttcttacagccgagaggaaaaagagaggtaaaaccgtgccagag
ggactggtaactacagaagacatcaaatcctataaacagctggcctcccatactggatta
catagtgccagtgtaccgggaatattggcgctggacatttgtttgaaggacacatccaaa
attgttacaggtggcaatgataaaaatgcagtggtattcaacaaggacactgagcaggtc
atggccattctcaaaggtcactccaagaaggttacaagtgttatctatcacccagaagat
gaacttgtgtttactgcgtcccctgatgccaccattcgtgtctggggagtggagactgcc
cagtgtggccaggtgatcagagctcacgacgccccagtaacaggaatcagtctgcacgcc
acgggcgattacttgcttagctcatccactgacatgcactgggctttctctgacatcaga
caaggacgagtattgaccaaagttagtgatccctcctctcagcatgctctcacctgcgca
cagtttcaccctgatggacttatttttggaaccggtactgaagactctatgatcaagatt
tgggatttgaaggggagactgaatgtggctaacttccctggtcaccagggcccaattacc
agcattgctttctcagaaaatggatactacttggcaacatcagctgaagactctgtcgtc
aaattgtgggatttgaggaaactgaaaaatttcaagacccttcagttgacagacaaatat
gaggtgaggtcccttgcttttgaccagagtggaacttacttaagtgtggcaggatcagat
gtcagagtgtacctttgcaagcagtggcaggagttgatttctttcaacgaccacacagcc
atggccactggagtaaggtttggtcacaacgccacatttgtcgcttcagcaagcatggat
agatctgtcaaattctttggaatgtcttga

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