Ostrea edulis (European flat oyster): 125679371
Help
Entry
125679371 CDS
T09123
Name
(RefSeq) DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oed03009
]
125679371
03012 Translation factors [BR:
oed03012
]
125679371
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125679371
5.6.2.5 RNA 5'-3' helicase
125679371
Ribosome biogenesis [BR:
oed03009
]
Eukaryotic type
Other ribosome biogenesis factors
125679371
Translation factors [BR:
oed03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125679371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
Znf_XAF1_N
nSTAND3
DEAD
UvrD-helicase
AAA_16
Helicase_RecD
IstB_IS21
T2SSE
Herpes_ori_bp
PIF1
AAA
UvrD_C_2
Zot
PhoH
AAA_22
ABC_tran
ATPase
Flavi_DEAD
Glyco_tranf_2_3
AAA_25
NPHP3_N
SLFN-g3_helicase
PilZ
CbiA
Motif
Other DBs
NCBI-GeneID:
125679371
NCBI-ProteinID:
XP_048774514
LinkDB
All DBs
Position
2:complement(54918615..54979721)
Genome browser
AA seq
1020 aa
AA seq
DB search
MDTFETACAIHNREFCVNKMSVESFVNQHIQLLEKEREAEIEETRHLNESLPPKELQRRG
VCLLKLQIKNRRTGLYGRTVVTFEPGGGHLELPAHNLTPGDIVSLNVSSAQQGDESLLSG
VVTHAGKAAISVAFDEKDLFSLDEDDLYKLTKLANNVTYKRLKNALNNLKRGDSGVSSKL
VDVLFGETELSPPFHLKDIHPVNTQLDESQQGAVQFALAQPEVAIIHGPPGTGKTTTVIE
IIIQAIKQGNKVLACAPSNIAVDNLLERLALHRQKVIRLGHPARVLPHIQKYSLDAILSS
SDETRLVEDVRKDLDKNLCTIRRTRDRGEKQKLREDIKFLRKELMQREEAASKEILKRAD
VVLATLTSADGSGPIKYLDKKHFDLVVIDECSQAVEAACWIPLLRAPRCVLAGDHLQLPP
TILSKEAASAGLERTLMERVLDLYDGKVMRMLTTQYRMHQLIMQWSSERLYEGKLIAHSS
VAGHLLRDIGNVEEDEETSEPLLLIDTAGCQLFELDVPDEISKGNEGEADIVSNHVEKLI
NLGVNQEEIAVIAPYNLQVELLRLRLSNNYPKVEIKSVDGFQGREKEAVIISLVRSNMKG
EVGFLAEKRRINVAVTRARRHLMVVCDSETVGHDTFLKSLVDYMSSHGVVRTAQEFLEAG
VVYNKLTRPDHLNDLLTLPNNNKGAKPKSAKKQQKSQNKKNPVKLESQVPAAEKYQKTQE
ETNEKIKEFQEYLDKFAQEPSSEELEFPSTLNSHDRMLVHELSEKMGLVHISKGSGKDRH
IVVSKPGGNSSECVKSTMLSISEISGSERSNTKGDKICLKTDEGDLPVQGPPEELDLQIQ
KEPDKVTCRHCSKSVIKANIQLHETHCLRIQRQKSAPKSANSDGKKQRDVPKVPNAHTDV
VAKLEKVAGDDLDSMIAAVQSVDRECSFKKCKTSTQTLGQVCEFCRRKFCLNHHMPEIHG
CGDAAKAKARATIIREGVLYRGSGVPDKKPDPTRKAQLQMKLDKKLTDMATKRQGKKPKK
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggacacattcgaaactgcatgtgcaatacacaacagagaattttgtgtaaataagatg
agtgtagaaagcttcgtcaatcaacatatccaacttctcgaaaaagaacgagaggcggag
atagaggaaacacggcatctaaatgaaagcttgccaccgaaagagcttcagaggcgaggc
gtgtgcctactgaagctccaaattaagaaccgacgcactggattgtatggaagaacagtt
gtaacatttgagccagggggaggacacttggagttacctgcccataacctgacaccaggt
gatattgtcagtctgaatgtcagttctgctcaacaaggagatgagagtttgctgtctggc
gttgtcactcatgcagggaaggcggccattagcgtggcttttgatgagaaggatttgttc
agtctggatgaggatgacctatacaaactcaccaagctagccaataatgtcacatataaa
aggctcaaaaatgctcttaacaaccttaaaaggggagattctggtgtgtcaagtaaactt
gttgatgtattgtttggggaaacagagttgtcgcctccttttcatcttaaagacatacac
ccagtaaacactcagttagatgaatcccaacaaggtgctgttcagtttgctcttgctcaa
ccagaggtagctattattcatggtccaccgggcacaggaaaaaccacaactgtcattgaa
atcatcatccaggccattaaacagggcaacaaggttttagcctgtgcaccctccaacatt
gctgtggacaatttattggaaagactagctcttcatagacagaaagtgatcagacttggt
catcctgcacgagtgctgcctcacattcagaaatactcactggacgccatcttgtcctcc
agtgatgaaactcgtctagtggaggatgtccgaaaagatctggataaaaatctgtgtaca
ataagaagaacaagggaccgtggagaaaaacaaaaattgcgagaagatatcaagtttttg
cgtaaagaattgatgcagagagaagaggcagcttcgaaggagatccttaaacgagctgat
gttgtcctggcaacacttacatcagctgacggaagtgggccaatcaaatatcttgataaa
aaacactttgatttggttgtgattgatgaatgctcacaggcagttgaggcagcttgttgg
attcctttattgagagcccctagatgtgtattggctggggatcatttacagcttccacca
accattctaagcaaagaagctgccagtgctggccttgagaggaccttaatggagagagtc
cttgacctttatgatggaaaggtcatgaggatgctgaccacccagtacagaatgcatcag
ctaatcatgcagtggtcatctgagcggttgtatgaaggaaaattgatagcacattcctcg
gtagctggtcatctcctaagggatataggcaatgttgaagaagacgaagagacgtctgaa
cctctgctgttgatagacactgctggctgtcagctctttgaacttgatgttcctgatgaa
atctccaaaggaaatgaaggagaagcagacattgttagcaatcatgtggaaaagttgata
aaccttggagttaatcaggaagagatagcagtgattgccccctacaacttacaggttgag
cttttgagattaagactctccaataactatccaaaagtagaaataaaatctgtggatggg
tttcaaggaagggagaaagaggctgtaatcatttcgctagtcagaagcaatatgaaaggt
gaagtaggatttttagctgagaaaagaagaatcaatgtcgcggtaacgcgggcaagacgt
cacctaatggtggtgtgtgacagcgaaactgtggggcatgacacattcttaaagtcttta
gttgactatatgtcaagtcatggagttgtgaggacagctcaggaatttttagaagctggg
gttgtatataacaaattgacacgaccagatcaccttaatgaccttttgaccttaccaaac
aacaacaaaggtgcaaaacccaagtctgccaaaaagcagcagaaatcacaaaacaaaaag
aaccctgtcaaactagagagtcaagttccagctgcagagaaatatcagaaaacacaagag
gaaacaaatgagaagatcaaagaatttcaggagtatttagataaatttgcacaggagccc
tcttcagaggaactggaatttccttctactttaaactcgcatgatagaatgcttgtccat
gagttgtcagaaaagatgggactggttcacatcagcaaaggatctggaaaagaccgacat
attgttgtgtcaaaaccaggaggcaacagttcagaatgtgtcaaatctacaatgctgtcc
atttctgagatttctggtagtgaaagatcaaacaccaagggagataagatctgtcttaag
acagatgaaggtgatttgccagtacaaggtccaccagaagaactggatctacaaattcag
aaagaacctgataaagtgacatgtagacactgtagcaaatctgtgataaaagctaacatc
cagctacatgagacacactgtttgagaatacagaggcaaaaatcagcaccaaaatctgct
aattctgatgggaaaaagcagagggatgtgccaaaagttccaaatgcacacacagatgtg
gtagcaaaacttgagaaggtggctggggatgatctggatagcatgatagcagctgttcag
agtgtggacagggagtgtagttttaagaaatgtaaaacaagtactcagactctgggacag
gtgtgtgaattctgtaggaggaagttctgtcttaatcatcacatgcctgagattcatgga
tgtggggatgcagcaaaggctaaagcccgagctaccatcattagggagggggtcctctac
agaggcagtggggttcctgacaagaagcctgacccaacacgtaaggctcagctacagatg
aagttagataaaaaattgactgatatggctaccaaaagacaagggaagaagcccaagaag
tag
DBGET
integrated database retrieval system
