Ostrea edulis (European flat oyster): 125679686
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Entry
125679686 CDS
T09123
Name
(RefSeq) ribonuclease 3-like isoform X2
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125679686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125679686
03009 Ribosome biogenesis [BR:
oed03009
]
125679686
03036 Chromosome and associated proteins [BR:
oed03036
]
125679686
Enzymes [BR:
oed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
125679686
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
125679686
Ribosome biogenesis [BR:
oed03009
]
Eukaryotic type
90S particles
RNase
125679686
Prokaryotic type
rRNA processing factors
125679686
Chromosome and associated proteins [BR:
oed03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
125679686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonucleas_3_3
Ribonuclease_3
RM44_endonuclase
dsrm
AF-4
Motif
Other DBs
NCBI-GeneID:
125679686
NCBI-ProteinID:
XP_048775067
LinkDB
All DBs
Position
2:complement(82723727..82773924)
Genome browser
AA seq
1345 aa
AA seq
DB search
MNFFGNQGIRNDGRSSGNNVSPLANPGMMQQSNMLVQGRSPSNLQQMVGLQMSVGPNMQL
FNAGSAMWNARSPGALQGLRQGMANQAMANLQMMQQGPSPMLSAAGVNMTAANQMLPGAG
GIMAGANQILQRGMSPIIPGLNIQLPPPGSGLGILDTPNLRPPGMMPNIAQNMIGLQTGM
FQQGISPVGQNQTGLLSSGVSQGSRKEDRDRGGREKDRSDVEDRRDRRDRGRSSRGDRSR
DDSRARERRDDSKSSRSRRDERSSDRKWDRGGREGRHRERDRSTDSARDDRRYRQDKNRN
RPRRSSPKRSRSPVRRDRGQQPDSRSGYDVLNGQDEIELPEEIIPAWLRCSPADLYFRRN
NETGCFNATKRMQDLLEKFETDLVQRSARVNASFPPVDIPQYPVTGNPHHHHHSGSESSS
SSSSESESESEEIKREEEWLETLNKRKKHPYRLHEDLWYNDKGELNDGPLCKCSLKSQKS
GIRHSKYPGEKAVPLCDPHSNNNDKLFHYRITMSPPTNFLTKAPTIIEHDNHEYIFEGFS
MLSHEKLENIPVCRVIRFNIDYTIHFIEEPIPDNFTVKSLDLFQQFLFDEILELVDLDWK
GPGNKDHCNRFHLMPRFARLLPENGKEILSMNDVLSYLLKSSKPLLEETELAQILNYDVH
EWQGFVDAVRGSVVTYPGMKPTSIRIDQLDRQQTDNQHLQFPLIIHFGIRPAQLSYAGDP
NYQRTWKQYVKFKHLLNSKPKVTFTDKQKLDAKEKYLQDLRMKSSMKREVTVEISSEGFL
RTGIRSDITQHAMLMPVLLGHLRFHLCIQVLQREIGYQFNDPQLLQLALTHTSYKVNYGT
NPDHARNSLSNCGVRQLEYGDRKIHYVHTRKKGINILINIMSRLGKQDECSSEIPHNERL
EFLGDAVVEFITSVHLFYMFPYLEEGGLTTYRAAIVQNQQLAVLAKKLRLENYMLYAHGP
DLCHESDLKHAMANCFEALLGALYLDGGIELADRVFGETLFKGEDKYLNIWRDLPLHVLQ
EDEPESDRHWIESSPTLKKLVQFEESIGVKFDHIRLLARAFTLRSVGFNHLTLGHNQRLE
FLGDTVLQLVASDYLFRHFPDHHEGHLSLLRSSLVNNRTQSIVCDDLGISEYVIFSDSRG
EKQDKKTKEKADLLEAFIGALYVDKDVEVCYKFCDVCFFPRLRDFIMNQDWNDPKSQLQQ
CCLTLRELDGGEPDIPVYKCIESIGPTNTRRYTVAVYFRHERLSTGIGHSIQQAEMAAAT
NALMERSELFPILAHQKRFLERKHKKKQSGKRTGRDQDLQENNERVNKDQEIKEGSGGVT
PASEKDAVPLRVTSLLDSFKERKKK
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttttggaaaccaaggaataagaaatgatggaaggagctcaggaaacaatgta
tcgcctcttgcaaaccctggaatgatgcaacagagcaacatgttggtacaggggagatca
ccctccaacttgcagcaaatggtgggcctccaaatgtctgtgggaccaaatatgcaactt
tttaatgcagggtctgcgatgtggaatgcaagatcgccaggtgctttgcagggtcttaga
caaggaatggctaatcaagcaatggcaaaccttcaaatgatgcaacagggacccagtcca
atgctatccgctgctggagttaatatgacagcagccaatcaaatgctaccaggtgctggt
ggcattatggcaggagccaatcagattcttcagaggggaatgtcgcccataattcctggg
cttaatatacagctgccacccccaggttcagggcttggtattctggacacgcctaacctt
cgaccacctggaatgatgccaaatatagcacagaacatgataggactccagacaggcatg
tttcagcagggaatctcacctgttggtcagaatcagactggtctcctctcttctggggtc
agtcagggcagtagaaaggaagatagagaccgaggtggccgggaaaaagacaggtctgat
gtggaggacaggagagacagacgggatcgagggcggtccagtcgaggggacaggtccaga
gatgatagcagagcaagagaaagaagagatgactccaagagttcaagaagtcgcagagat
gaaaggtcaagtgacaggaagtgggatagaggtggtcgagagggaagacatagggagagg
gacagaagcacagactcagcgagggatgacaggcgatacagacaagacaaaaacagaaac
agacccaggagatccagtccaaagcgatcccggagtccagtgagaagggacaggggtcaa
caacctgatagccggtccgggtatgatgtgctgaacggacaggatgagatagaactccca
gaggagattattcccgcatggctccggtgttctccagctgatctctacttcaggaggaac
aatgagacaggatgcttcaatgccacaaagaggatgcaggacttgttggagaagtttgag
acagatttagttcaaaggtcagctcgagtgaacgcatcctttcctccagtagacatccct
cagtacccagtgacagggaatccccaccaccaccaccactcaggttctgagagcagcagt
tccagcagctcagagtctgagtcagaatccgaagaaattaagcgagaggaagaatggctg
gagactctgaacaagcgcaaaaaacatccgtacagactccatgaggacctatggtacaat
gacaaaggggagttgaatgatggtcctctttgtaaatgcagtctgaagtctcagaagtct
gggatccgacacagcaagtatccaggggaaaaggctgttcctctttgtgatccacacagc
aataacaatgacaagcttttccactacagaatcaccatgtctcctccaaccaatttcctg
acgaaggcccctacaatcatagaacacgacaaccatgagtacatatttgaggggttttct
atgttatctcatgaaaagctggagaatataccagtctgcagagttatccgattcaacatt
gactacacaattcattttattgaagaacccattccagataattttaccgtgaagagctta
gacctgtttcagcagttcctgtttgatgagatcctggagctggtagacctggactggaaa
ggtccgggcaacaaggaccactgtaacagattccacctcatgccaagatttgctagactt
ctaccagaaaatggtaaggagatcctgtcaatgaatgatgtgctgagttacttactgaag
agctccaagccattactggaggaaacggaattggcccagattctgaattatgacgtacac
gagtggcagggctttgtggatgctgtccgtggaagtgtcgtaacctatcctggcatgaaa
cctaccagtattagaatagaccagctggatcgacaacagactgataatcaacatctccag
tttcctctcatcattcacttcggcattagacccgcacagctgagctacgcgggagaccct
aactaccagagaacctggaaacagtatgtcaagttcaagcacctgctgaacagcaaaccc
aaggtgacttttaccgataagcagaagctggatgctaaagagaagtatctacaggaccta
agaatgaagagttctatgaaaagggaggtaactgtggaaattagcagtgaagggtttctg
aggacggggatcagatcagacataacacagcatgcaatgttgatgcctgtcctgttgggt
cacttaagatttcatctctgcatacaagtactccagagggaaatcgggtatcagttcaac
gacccacaactccttcagttggctctcactcacacttcctacaaagtgaattatgggacc
aacccagaccacgccaggaattccctgtctaactgtggagtcagacagctggagtatgga
gaccgcaaaatacactatgtccatactcgaaagaaaggtatcaacatcctgattaacatt
atgtcccgccttgggaaacaggacgagtgttcatcagaaatcccacacaacgagagactg
gaatttcttggggatgctgtggtagaatttataacaagtgtccatcttttctacatgttt
ccctatctggaggaaggagggctgaccacttacagagcagccatagttcagaatcaacag
ctggccgtactagccaagaagctgcgtctggagaactacatgctgtatgcccacggtcct
gatctctgtcacgaatccgacctgaaacatgccatggcaaactgttttgaagcattatta
ggggctttatacctggatgggggtatagaactggcagaccgagtgtttggggagaccctg
tttaagggcgaggacaagtatctgaacatctggagagacctgcctttacacgttctacag
gaggatgaacccgagtctgaccgacactggatcgagtccagtcctacactgaagaaattg
gttcagtttgaagaatccatcggagtgaagtttgaccacattcgcttgctagcccgggcc
ttcacccttagaagtgtgggctttaatcacctcacattgggccacaaccagagacttgag
ttcctaggggacactgtgttacagctggtggcctcagactacctgtttagacatttccca
gaccatcatgaaggccatctctcattgttgagaagttcccttgtcaacaatagaacccag
tccattgtttgtgatgatctggggatctctgagtacgtcattttctcagactctcgggga
gaaaaacaggacaagaagacaaaagaaaaggctgaccttctcgaagcgtttattggtgcc
ctgtatgtggataaagatgtcgaggtttgctacaaattctgtgatgtgtgctttttccca
agattaagggatttcattatgaatcaagactggaatgatcctaagtcgcagcttcagcag
tgttgtctgacattacgagaacttgacggaggggaaccagatattcccgtttacaagtgt
attgagtctatcgggcccaccaacacacgtcggtacacggtagccgtttacttcagacat
gaaagactttccacaggaataggtcacagcatacaacaggcagagatggctgctgctact
aatgctctgatggaaagatcggaattgtttccaatcctggcccatcaaaagaggttctta
gaaagaaaacacaagaaaaagcagtcgggtaagaggaccggacgtgatcaggacctgcag
gaaaataatgagcgagtcaataaggaccaagaaatcaaggaagggtcagggggagtcacc
ccagctagtgagaaggatgccgtcccactcagagttacctcccttcttgattccttcaag
gagaggaagaaaaagtga
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integrated database retrieval system
