Ostrea edulis (European flat oyster): 125680250
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Entry
125680250 CDS
T09123
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03013
Nucleocytoplasmic transport
oed03015
mRNA surveillance pathway
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125680250
09122 Translation
03013 Nucleocytoplasmic transport
125680250
03015 mRNA surveillance pathway
125680250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125680250
03041 Spliceosome [BR:
oed03041
]
125680250
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125680250
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125680250
Spliceosome [BR:
oed03041
]
Complex C
Other components
EJC/TREX
125680250
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125680250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
DUF3256
BRCT
AAA_19
Motif
Other DBs
NCBI-GeneID:
125680250
NCBI-ProteinID:
XP_048775642
LinkDB
All DBs
Position
2:101304090..101311922
Genome browser
AA seq
426 aa
AA seq
DB search
MADNENETELLDYEEDDTEATADGTGDAPVKKDVKGTYVSIHSSGFRDFLLKPELLRSIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNVKIAVFFGGMSIKNNEDVLKKNCPHIIVGTPGRILALCN
SKQLNLKHVKHFVLDECDKMLAALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRAVCKR
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALSQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNEVQERFEVNITELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaatgagaatgaaaccgagcttttggattatgaagaggacgacactgaagcg
actgcagatggaactggggatgcccctgtcaaaaaggatgtcaagggaacctatgtctct
attcacagctctgggttcagagattttcttctgaagccagaattgctgagatccattgta
gattgtggatttgagcatccctcagaagtccagcacgagtgcattcctcaagcaatattg
tccatggatgttctctgtcaagccaaatctggaatggggaagactgctgtgtttgtattg
gctacacttcagcagctagaacctgtagatggtcaggtatctgtattggtactagcacac
acaagagaactggccttccagataagcaaagagtatgagaggtttagcaagtacatgaac
aatgtaaagatagccgtcttcttcggaggaatgtccatcaagaataatgaagatgtcttg
aaaaagaattgtcctcacattattgtcggtactcctggtcgaatcctggctctctgtaat
tccaaacaactcaacctgaagcatgtgaaacattttgttctggatgaatgtgacaaaatg
ttggcagcccttgacatgaggagagatgttcaggaaattttccgcaacaccccccacgaa
aagcaagtgatgatgttcagtgcaacattgagcaaggaaatccgagctgtctgcaagaga
ttcatgcaagatcccatggaagtgtatgtggatgatgattcaaaactgacactccacggt
ctgcaacagcattatgtcaagctaaaggacaacgagaagaataggaaattgtttgaactg
ttggatgttctggaatttaaccaggtcattatctttgtgaaatcagtacagaggtgtatg
gcactgtcacaactacttgttgagcaaaacttcccagcaattgcaatccatagagcaatg
acacaggaagaaagactgtcacggtatcaacaattcaaagactttcagaagaggatacta
gtggctactaacttgtttggtcgaggaatggacatagaaagagtgaacattgtttttaac
tatgacatgccagaggactctgacacttacctacatcgagtggcacgtgcaggtaggttt
ggtaccaagggacttgctatcacatttgtgtctgatgaaactgacgctaaagttctgaat
gaagtacaagaaagatttgaagttaacatcacagagttgcctgatgaaattgacatttca
tcgtatatcgagggacgttga
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