Ostrea edulis (European flat oyster): 125680529
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Entry
125680529 CDS
T09123
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125680529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oed04131
]
125680529
Membrane trafficking [BR:
oed04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125680529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
TPR_VPS8_2
WD40_CDC20-Fz
Clathrin
zf-RING_Vps41
WD40_Prp19
zf_RING_Vps8_fungal
ANAPC4_WD40
WDR55
Prok-RING_1
zf-RING_5
Beta-prop_EML
zf-RING_2
zf-C3HC4
PHD
WD40
zf-RING_UBOX
Beta-prop_HPS5
zf-RING_11
EIF3I
zf-rbx1
POU2F1_C
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
125680529
NCBI-ProteinID:
XP_048776155
LinkDB
All DBs
Position
2:44687458..44742151
Genome browser
AA seq
1378 aa
AA seq
DB search
MAEEISNSVLNFDIEFDDEEFKSDLPTVENPTLESILNESEDYESPVEDDTSSVISAVQM
FKDSGDTTSLSSSDSNRTDRSARSRQKKKIDLQKTVHGSVLKPNRLKNIAAQLHSAADRV
DAGMPTSMAVSSLIAIGTSHGLVLVFDPKQVLKWCLGSTAVGQQYGSVSALSFNKDCTRL
LSGFAKGQITMWDLTNGKLLRTITDAHPPGSAVLHVKFTDSPVLAVCSDSGGSVFELEMK
RLIGVRTCESKCLFSGSRGEVCVVEPLHMNLTIKDHPMQDVMVVAMATLSKVLLVTLRPQ
LKVVFTHALKGSPTSLPLLAWQFVIIQVSEKDRVIDPVLVFARESTIYFFQVICNNAQDI
KCSGLQKIIVPYKMLSVAWMNPRILVALDTNEKIHVIDVRSEEELEVLDVSDVQLVYNNS
QFKSLATGGNVSQALAMAGEEACYQTVVSHNGQLLLLGTKAVYVYTLRNWKERIDVLVKQ
NKYNEALALSLSFYDGRAKAIIGLGGSSKSKREIVSDMMLELLFEYVDLSMTTLCPEKGK
MEELEAYYQNIVPVCVDYCLHLSRTDILFGRIYDRFAVDYIARGTFLECLEPYILSDKLR
SIPPSVMKDLVEHYQAKNMLEGVESCIVHLEVTSLDIHQVVNLCWSHGLYDAIIYVYNKG
MFDYTTPLEELLGILQQAVSTGIQLTDEQIRLGNKLLVYISCCLAGRAYPLGDIPEEMVA
DVKKNVFQCITRLRVKNNESTHPYLRTLLQFDTREFLNVLALAFEEKEFNTEEGIRNRQR
VVDILLQVVVESGEFTPTQIGILFTFLARQMACHENTILVNRVLFEQVLEFLANPEDDSR
HEERQQALMELLQAGGLQQVDEEKLLSMAENAKFYRVCELLYEKRRHFDKILSCYLRDPS
RKYHAFSYITSILNSERFTLEEQERLKEEAFNQLEELVSIDCKQAAQMVISTMPKNLGVV
ANKMKSNPKILFGFLKGVMSYRESSSSAIHTDKQVNIEPWIMELYVDLMCQFRPQEVYNY
IKLNEGYRLEQTLEICRKHKHSEATAYLLEKAGDIQGAFGIILTNLQNKLKLLTNELLTP
DSEKDVTVQFLEVQALILVVIQLCQRNSGKMDEAGRESLWFPLLETVMSPQRKLKDLNNK
QIHEDFKKATHHVLNSMMGYIALPTILHKIMQDPAYSTGKFGEVRELILGMLETYNYEQT
LMETCKNLLNHDIHVHLKNLTSAATKGYIPKGDGCDLCTKQFINQNETDTVIIFRCGHSY
HKGCLQSIGSVHVIDGEDSWICYLCSHRKRGQFQSTRFHRSLSNRGQPKSKDNISVDPQH
SQALDFVRNFLKTPSRMALLNELSKESGPRSHRGTSSIFNQENFQLKLAPPPAMESVP
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaaatatcgaatagtgtgttgaattttgatattgagtttgatgatgaggaa
tttaagtctgacttgccaactgttgaaaaccctacccttgaaagtattctgaatgagtct
gaagactatgaatcaccagtggaagatgacacatcgtctgttatttctgcagtacaaatg
tttaaagactcaggcgacacaacctctttgtcaagctccgacagcaaccgcacagatcgc
agtgcaagatccagacagaagaagaagattgacctccaaaagacagttcatggctcggtt
ttgaaaccaaatcgtttgaaaaatattgcagctcagctgcacagtgctgcagatagagtt
gatgctgggatgccaacgtcaatggcagtttcgtccttaattgccattggaacatcgcat
ggacttgtgctagtgtttgatccaaaacaggtgttgaaatggtgtctaggaagcacagca
gtggggcagcagtatggttcagtgtctgctttaagtttcaacaaagactgtaccagatta
ctttctggatttgccaaaggacaaattactatgtgggacttgaccaatggcaaacttttg
aggacgataacagatgctcatccaccagggtcagcagtcttgcacgtgaagtttacagat
agtcccgtgttagctgtgtgtagtgacagtggtgggtcggtgtttgaactggaaatgaag
cgattgattggcgtacggacctgtgaatctaaatgtcttttctcaggaagtcgaggagaa
gtttgtgttgtcgaacccttgcatatgaaccttacaatcaaagatcatccaatgcaggat
gttatggttgttgctatggctactttgtccaaggttttgttggttacacttagaccccag
ctgaaagttgtattcacccatgcactaaagggcagtcccaccagtttgccactgctagcc
tggcagtttgtcatcatacaggtatcagagaaggaccgagtcattgacccagtgttggtg
tttgccagggagtccaccatctacttcttccaggtgatctgtaacaatgcccaggatata
aagtgttcaggtctacagaagataattgtaccatacaagatgctgagtgttgcttggatg
aatcccagaattttagttgccttggatactaacgaaaaaattcacgttatagatgtcaga
tcagaggaagaacttgaggtccttgatgtttcggatgtacagctggtgtacaacaacagt
cagttcaaatctttggcaacaggagggaatgtcagccaagcactggcaatggctggagag
gaagcctgttaccagacagtggtcagtcacaatggtcagttactactactgggcaccaag
gccgtctatgtttacaccctgcgcaactggaaagagcgtattgatgtactcgtgaaacag
aacaagtacaatgaagcactggccctctccttgtcattctacgatggtcgagccaaggcc
atcataggactcggtgggtcctccaaatcaaagagggaaatagtctctgatatgatgttg
gagctactgtttgagtatgtagatttgtcaatgacgacactgtgtccagagaaagggaag
atggaggaattggaagcatactatcagaacatagttcctgtgtgtgttgattactgttta
cacctcagtagaactgacatcttgtttggaaggatttatgacagatttgctgtagattac
attgcccgggggacatttttggagtgcctggagccctatatcctctctgacaagctgcgc
tccattcccccgagtgtgatgaaggatctggtagaacactatcaagccaagaacatgctg
gaaggggtggagtcctgtatagttcacctggaggtcaccagtctggatatacaccaggtt
gtaaatttgtgctggtcacatggactgtatgatgccatcatttatgtctacaataaaggg
atgtttgattataccacaccgttagaagagctgttggggattttacagcaagctgtcagc
acaggcatacagttgacggatgaacagatacgactgggaaataagctgctggtctatatc
agctgctgtctagcaggaagagcttacccattaggagacatcccagaagaaatggtggca
gacgtcaaaaaaaatgtctttcagtgtatcactcgtttgagggtcaagaataatgaatca
acccacccatacttaaggacattgcttcagtttgatacaagagagttccttaatgttcta
gctttagcttttgaagagaaagaatttaatacagaggaaggaatacgtaatcgtcaaagg
gtagtggatattctgctgcaagttgtggtggaaagtggagaattcaccccaacacagata
gggatcttattcacattcctagccagacagatggcttgtcatgaaaataccatcttagtc
aacagagtcttatttgaacaggtgctggagtttttagctaatcctgaggacgattctcgc
catgaggagagacagcaggctctgatggaactcctacaggccggggggttacaacaggtt
gacgaggaaaagttactgtctatggccgagaatgctaagttttatcgtgtttgtgagctg
ctgtatgaaaagagaagacattttgacaagattctgtcatgttacctgagagatccctca
aggaagtatcatgcctttagctatataaccagtattctgaatagcgaaagatttactttg
gaggaacaagagaggctaaaagaagaggcctttaatcagttagaggaattagtgtcaata
gattgtaagcaagcagctcagatggtgatttctacaatgcccaaaaacctgggagttgta
gccaacaaaatgaaaagtaatccaaagattttgttcggtttcttgaaaggtgtgatgtca
tacagggaatcgagtagcagcgccatacacacagacaaacaggtgaacatagagccgtgg
atcatggaactgtatgtggatcttatgtgtcagttcagaccacaggaagtgtataattac
atcaagcttaatgaaggttacagactggagcaaactctggagatttgcagaaagcacaaa
cactctgaagccacggcttacttgctggagaaagcaggagacattcagggagcttttgga
atcatactgactaacctccaaaacaaactgaaattactgactaatgagttactgacccct
gattccgagaaagatgttacagtgcagttcttagaagtccaggctctcattctggtggtc
atccagctgtgtcagaggaactcgggcaaaatggacgaagcaggacgagagtcattgtgg
tttccgctgctggagactgtcatgtcaccacaacggaaactaaaagacctgaacaacaag
cagattcatgaagatttcaaaaaggctacacatcatgtcctcaacagcatgatgggatat
atagctttacccacaattcttcacaaaattatgcaggatcctgcatatagtactggaaag
tttggcgaagtcagggagttaatcctagggatgctggaaacatacaattatgaacaaact
ctaatggaaacctgtaagaatttgttgaaccatgatatccacgtacatctgaagaatcta
acatcagctgccaccaaaggttacattcctaaaggagatggttgtgatctatgtaccaag
caatttatcaaccagaatgaaacagatactgtcatcatatttagatgtggacacagttac
cataagggttgcctgcagtcgattggatcagtccatgtgattgatggtgaagattcctgg
atttgttatctatgtagtcaccggaaacgtggccagtttcagagcaccaggtttcaccgc
agtctcagtaaccgtggacaacccaaaagcaaagataatatttctgttgatccccagcat
agtcaagcccttgattttgtgagaaactttttaaagactccatcaagaatggcactactt
aatgaactatctaaggaatcgggaccaaggtcacacagaggaacttcaagtatctttaat
caagaaaacttccagctcaaattggcacctccacctgcaatggaatctgtgccatga
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integrated database retrieval system
