Ostrea edulis (European flat oyster): 125680782
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Entry
125680782 CDS
T09123
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125680782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125680782
03012 Translation factors [BR:
oed03012
]
125680782
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125680782
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125680782
Translation factors [BR:
oed03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125680782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
OB_NTP_bind
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
TsaE
Cas3-like_C_2
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
125680782
NCBI-ProteinID:
XP_048776510
LinkDB
All DBs
Position
1:76853107..76893410
Genome browser
AA seq
1122 aa
AA seq
DB search
MQTYCKIIQKRVFSGFVRDDIVKLPYSMSWRGHRRRYDGDRHMGFHNDGRGRDDAYGDVD
EGFQHNDGWRRRDRGRPDYRRGHGRGGHEEGNRRGRRPSGLRGRDIGMFYAARSKAKKER
RELEERPFVAMESSDMNKIKAVLDSVEDPPRGRVHDNTDKWRPRTAPSSGRATTATCTQD
EKNTRRPSSGIKIEKNTALEASSLMEEASGWEALASEEKRVKKFRTTESKVEKDSPESSQ
PASSSNAEEEDILEDIMPSVEDLKEFSEDLDQILPANSDLDFDEEVNRQPDLDAELKEEL
EEKMKSSKYRNMLSSRQRLPAYKQRKEIIQLINSNQVIVLSGETGCGKTTQVPQFILDDH
IERGMGSMCTVVCTQPRRISAISVAERVAEERGEKCYEFDRSSSVGYSIRLENRLPRKRG
SILFCTTGIILRRLESDPTLKSASHIIIDEVHERDVLCDFLMVVVKDLLAIRPDLRIILM
SATLNAEKFSNYFNNCPHINIPGFTYPVKEYFLEDVLQLTGYFPKSTPQSGFRGKRGRWR
KQQLEKEEEERWNTEAWARNLPTNKYSDKTISAVMQIDMKKIDLDLVMEVIRHIVNYMKD
GAVLVFVPGWKEISDLNKMLLEDSKMNNGKLRIVPLHSLMPTVNQKEVFDRPPPGIRKIV
IATNIAETSITIDDVVYVVDCGFIKVNDFQPETGLLSLDSYQVSRANALQRKGRAGRVQA
GHCFHLFTSLQYSEMKEYLAPEILRTRLEELCLMIKILKLGKIEPFVSKALDIPSGEAVK
AAIVTLQNLQALDDDEELLPLGYHLARLPLDPHTGKMILFAAMFGCLDPVCLVAACLSFK
SPFVTPLGKEGLADKCRQAFAERSRSDHIMLIKAFRRWEKAARQGNGGKFCYDNFMSETT
LRMLKKMKKQFAELLCDIGFVNSPDPNSRLSNVHSDNENLVTAVLCAGLYPNVAKVTKPA
IPGKRCVAVHLQNGMKASLHKQSVNSFGTFFPSKWLIYHKILKMQTINVFDCSMVSPYPL
LFFGGKITYNVTTLNGRERDCITVDNWIPFWTEKATFDLVKDLRRQLDRILEDRIVSPKV
IDLTVKSREQVIINAIVDLISKEEVNYHNFCEGDFEDPTEYS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagacatactgcaaaattatccagaagagggtattttctggatttgtacgtgatgac
attgtaaagttaccatacagcatgagttggcgtggacacagacgtcgctatgatggggac
agacacatgggatttcataatgatggcagaggcagggatgatgcttatggagacgtggat
gagggctttcagcataatgatggatggagacgcagagatcgtggcagacctgattataga
agaggccatggtaggggaggtcatgaggaaggcaatagacgaggtagacgcccatctggt
ctgagaggtagagacatcggaatgttttatgcagctcgtagcaaggccaagaaagaaaga
agagagttggaggagagaccctttgttgccatggaatccagtgatatgaacaaaataaag
gcagtcttagattctgtggaggatccaccaagaggaagggtccatgacaatacagataaa
tggagacctagaacagctccaagctcaggaagagcaacaactgcaacatgtactcaagac
gagaaaaatacaaggagaccatcttcaggaatcaaaattgagaaaaatacagcactagaa
gccagcagtcttatggaggaagcaagtggatgggaagcattggcctctgaggaaaagaga
gtaaagaaattcagaactactgaaagtaaagtagagaaagactcacctgaaagcagtcag
ccagcatcttcatcaaatgcagaagaagaagatattttggaggatatcatgccaagtgtt
gaagatttaaaggaattttctgaagatctagaccagattttaccagcaaactcggattta
gattttgatgaagaggttaatcgtcagccagatcttgatgcagaattgaaagaagagttg
gaagaaaaaatgaagagttcaaaatataggaatatgttgtcaagtagacaacggctgcct
gcttacaaacagcgaaaggagattattcagttgatcaactccaaccaagtcattgtattg
agtggcgaaacaggatgtggaaaaactactcaggtaccacagttcatattagatgatcat
atagagcgtggaatgggatcaatgtgcactgttgtttgtactcaaccaagaagaatatct
gctatttcagttgcagagcgggtggcggaggagagaggagaaaagtgttatgaatttgac
aggagttcttctgtaggctactctattagattagaaaatcgactgcctaggaagaggggg
tccattttgttttgcaccacaggtattatattgagaagattggagtcggatccaactctg
aagtcagcatcacatatcatcattgatgaagttcatgagcgagatgtactgtgtgatttc
ctgatggtagttgtgaaagatttgttggcaatccgccctgatctacgtattattctgatg
agtgctactctgaacgcagagaaattttctaactactttaataattgcccgcatatcaat
atacctggattcacctatcctgtaaaagaatatttcttggaggacgtcttacagcttaca
gggtactttccaaaatcaacgcctcaatctggatttagaggaaaacgaggacgatggagg
aaacaacagctggagaaggaggaggaggagaggtggaacactgaagcgtgggccaggaac
ctcccaaccaacaagtactcagataaaacaatatcggctgtaatgcagatagacatgaag
aaaattgacctggatctcgttatggaggtgatacgtcacatagtgaactatatgaaggat
ggagctgttttagtttttgttcctgggtggaaggaaatatcagatctgaataagatgtta
ctggaagattccaagatgaacaatggaaaactgcgtattgttccattacattccttaatg
cccactgtgaaccagaaagaagtctttgatagaccacctccaggaattcggaagattgtc
atagcaacaaacatagcagaaacaagtataacaattgatgacgttgtatacgttgtggac
tgtgggtttatcaaagtcaacgacttccaaccagagacaggattattgtctttggatagt
taccaagtgtctagagccaatgctttgcaacgcaaaggcagggctggaagagtacaggct
ggccattgtttccatctgtttacaagtctgcagtactcagaaatgaaggagtacctagca
ccagagatactgaggactaggctggaggaactctgtttgatgattaagattctgaagtta
ggaaaaattgaaccttttgtgagcaaggctttggatattccctcaggagaggctgtgaaa
gctgccattgtcaccctccaaaatttacaagccttggatgatgatgaagagttactcccc
ttagggtatcacttggcccgtcttccacttgaccctcacactgggaaaatgattctgttt
gctgccatgtttggctgtctggaccctgtgtgcctcgttgcagcatgtctcagtttcaag
tcgccgtttgttacaccactgggcaaagaaggtcttgcagacaagtgcagacaagctttt
gcagaaagaagcaggagtgatcatattatgctcatcaaagcatttaggagatgggagaag
gctgctcgccaaggaaatggtggaaagttctgttatgacaattttatgtcagagactact
ctcaggatgctgaaaaaaatgaagaagcagtttgcagagctactgtgtgatattggattt
gtgaattctccagatccaaacagccgattgtctaatgttcactcagacaatgagaatttg
gtaactgctgttctctgtgctggtctatatcccaatgttgcgaaagttacaaaaccagct
attcctggaaaaaggtgtgttgctgttcacctgcagaatggaatgaaggcctctctccac
aagcagtctgttaattcttttgggacatttttcccatcgaagtggttgatttaccacaaa
atcctgaagatgcagacaataaatgtctttgactgtagtatggtatcaccataccctttg
ttgttctttggaggaaaaatcacttacaatgtcacaactctgaatggaagggaaagagat
tgtataaccgtggataattggattccgttctggacagaaaaagcaacgtttgatctagtc
aaggacctgaggaggcagttggacaggatactagaagacaggattgtatcaccgaaggtt
attgatttgactgttaaatccagggagcaggtaatcattaacgccattgtggacctcatc
tctaaagaggaagtgaattaccacaacttctgtgagggtgattttgaggatcccacagag
tacagctaa
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