Ostrea edulis (European flat oyster): 125680983
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Entry
125680983 CDS
T09123
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125680983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125680983
03041 Spliceosome [BR:
oed03041
]
125680983
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125680983
Spliceosome [BR:
oed03041
]
Complex B
Other components
Prp19-related factors
125680983
Complex C
125680983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
Mad3_BUB1_I
ARM_TT21_C
ARM_TT21
PPR
DUF6381
Motif
Other DBs
NCBI-GeneID:
125680983
NCBI-ProteinID:
XP_048776808
LinkDB
All DBs
Position
2:complement(29500760..29523474)
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AA seq
854 aa
AA seq
DB search
MTIEMPVETVEQKQSDLYFEEDDLPFEEEILRNPYSVKSWLRYLEYKKEATRNCVNLIYE
RALRELPGSYKLWYNYLKLRRRQVKGRCINDPAVEDVINAHERALVFMHKMPRIWIDYCQ
YLVDNSRITKSRRTFDRALRALPVTQHHRVWPLYLKFVRLYDLPETAVRVYRRHLKLQKE
NTEGYIEYLMKIGWLDEAANRLVDIINDDAFVSREGKSKHQLWNELCDLVAKNPDKVTSL
KIEPIIRQGLKRYTDQIGVLWNAMADYYIRGGHFERARDIYEESILTVITVRDFTQVFDA
YAQFEKNLISSKMESMEETGASEEDDLELELRLARLENLMERRPLLLNSVLLRQNPHNVH
EWHKRVKLFEGKSREIINTYTEAVQTVDPKLASGKPNTLWVEFAKFYEKAGQIEDARIIF
DKAVRVPYKHVDDLASVWCEWSEMEIRHDNNEEALKLMQRATTPPPRKVSYHDETETVQS
RVHKSLRVWSLYADLEESFGTFKTCKSVYDKILDLRIATPQIIMNYGLFLEENNYFEEAF
KAYEKGIALFRWPNVYDIWNTYLTKFMERYGGSKLERSRDLFEQCLEKCPAKFAKSFFLL
YAKLEEEHGLARHAMAVYDRATKAVLPEEQNEMFNVYIKKAAEIYGVTYTRPIYEKAIEV
LPDEQARNICLRFADLERKLGEIDRARAVYAHASQISDPRVAPNFWQVWKEFEIKHGNED
TVREMLRIKRSVQAIYNTQVNFMSAQMLAVSGGKGDNAAGEAVDKDNMQRLEERARQLAE
ESVKDQAKTDKGILFVRSDNTQEELGELTKTANPDAIDIDDDFSSDEEAQVEEMEVKSVP
TEVFGSLKNEEEED
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgaccattgaaatgccagtcgaaactgttgagcaaaaacaaagtgatttatattttgaa
gaagatgacttaccctttgaagaagaaattcttcgtaatccatactcagtgaagtcatgg
ttgagatacttagaatacaaaaaggaggcaacgaggaactgtgtaaatttgatatatgaa
agagcccttcgagagctcccaggcagttacaaattatggtacaactatttgaaacttcgg
cgaagacaggttaaaggtcgttgcataaatgatcctgctgttgaagatgtcatcaatgcc
catgagagggcacttgtttttatgcacaagatgccaaggatttggattgattactgccag
tatttagtggacaatagcagaataacaaaatcaaggcggacatttgacagggcactccgg
gctctgcctgtgacccagcaccacagagtctggcccctgtatctgaagtttgtccgatta
tacgatctgccagagacagctgtcagggtgtaccggagacacctaaagcttcagaaggag
aacacggagggctacattgagtacttgatgaagattggctggttggacgaggcagccaat
agactggtggacattatcaacgacgatgcttttgtctcgagggagggcaagtctaaacac
caactgtggaatgagctgtgtgaccttgtagccaaaaacccagacaaggtgacctcactg
aagatagaaccaatcattcgtcagggactgaagcggtacactgatcagatcggggtcttg
tggaatgccatggcagattattatatcagaggggggcattttgaaagagcaagggatata
tatgaagaatccatcctaacagtcattactgtgagggatttcactcaagtgtttgatgcc
tatgctcagtttgagaaaaacttgatcagttctaaaatggaaagcatggaagagacaggt
gcctctgaggaagatgaccttgagcttgaactccgattagccaggctggaaaacctgatg
gaaagacgaccacttcttttaaacagtgtccttttgagacaaaatcctcataatgtccat
gaatggcataaaagagtcaaactctttgaggggaaatcaagagagataattaacacatat
actgaagctgtacagactgttgaccccaaacttgcttcaggaaaaccaaacaccttatgg
gtggaatttgccaagttctatgagaaagctggacagatagaagatgcaagaattatattt
gacaaagcagttcgagtcccgtacaagcatgtggatgatctggcgtcagtatggtgtgag
tggtcagaaatggaaattcgacatgataataatgaagaagccttaaagttaatgcagaga
gcaaccaccccaccacccagaaaagtatcataccacgatgagactgaaacagttcaaagt
agagttcacaagtcattaagagtgtggtcattgtatgcagacttggaggaaagtttcgga
acatttaagacttgcaaatcagtgtatgataaaatcctcgacttacggattgccactcca
caaatcatcatgaactatggcctcttcctggaggaaaacaactattttgaggaagccttt
aaggcttacgaaaagggaatagcattgttcagatggccaaatgtgtatgatatatggaac
acatacttaacaaagtttatggaaagatatggtggctcaaagttagaaagatccagagat
ctctttgaacaatgcttagaaaagtgtccagccaagtttgcaaagagtttcttcttgttg
tatgctaagttagaggaggagcacggtttagccagacatgccatggctgtgtatgacaga
gcaaccaaagctgtgttgccagaggaacaaaatgagatgttcaatgtgtacataaaaaaa
gcagcagagatctatggtgtcacgtataccagacctatttatgagaaagctatagaagtg
ttacctgatgaacaggccagaaacatttgcttgcggtttgctgatttggagagaaaactt
ggagaaattgaccgagcccgggcagtttatgctcatgcctcccagatctccgatccaagg
gtggcaccaaatttctggcaagtttggaaggagtttgagattaaacatggtaatgaggac
actgtgagagaaatgctgagaatcaaacgttcagtacaggctatatataacacacaagtc
aacttcatgtccgcccaaatgttggcagtatctggtggaaagggagataatgctgcaggt
gaggcagttgataaggacaacatgcaaagactagaggagagagccaggcagctagccgag
gaatcggtgaaagaccaggccaagaccgataaaggcatcttgtttgtcaggagtgacaat
acacaagaggagctgggagaattgactaaaactgctaacccggatgctatcgatattgat
gatgatttctccagtgacgaggaggcacaagtggaagagatggaggttaaatctgttcct
actgaggtatttggatcattgaaaaatgaggaggaagaggactaa
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