Ostrea edulis (European flat oyster): 125681002
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Entry
125681002 CDS
T09123
Name
(RefSeq) retinoic acid receptor RXR-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125681002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oed03000
]
125681002
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oed03310
]
125681002
Transcription factors [BR:
oed03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
125681002
Nuclear receptors [BR:
oed03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
125681002
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
125681002
NCBI-ProteinID:
XP_048776838
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Position
2:9128543..9160067
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AA seq
490 aa
AA seq
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MYVLITSDAPCKTNMVANFKPIETESSLHGLWIPPITDSLDGVSSNSSMSTAASIGMGMS
PSMGISSMAQMGSPPDIKPDINSLVSPSFYPYGIQHPMSQSQASPGSQPMMSPGLHSPSS
SVTSPSMMSIGSPGSAASPPGTNPHMPHTNLNSKHICAICGDRASGKHYGVYSCEGCKGF
FKRTVRKDLTYACRDDRNCIIDKRQRNRCQYCRYMKCLNMGMKREDVKCSTDAGRQGSSV
QEERQRVKEKGEGEVESTSSANSDMPVEKVLEAELAVEPKTDTYIDAQKDAVTNICQAAD
KQLFTLVEWAKRIPHFTELPLDDQVILLRAGWNELLIAGFSHRSIVVKDGILLATGLHVH
RSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAVSEVEQLR
EKVYASLEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLLE
MLESPSPSST
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtgctcattacttcagatgctccatgtaaaactaatatggttgctaatttcaaa
ccgatagaaacggaaagtagcctgcatggcctatggattcccccgattacagattctcta
gatggggtgagcagcaactcaagcatgtcaacagctgccagcattggcatggggatgtct
ccttccatgggaatcagctcgatggcacagatgggttcccctccagacatcaaaccagac
atcaattctctcgtgtcaccctcattttatccctatggtattcagcaccccatgtcccag
tcacaggcctcccctgggtctcagccaatgatgtcaccaggattgcactcgccatcttca
tcagtaacctcaccctccatgatgtcaattggctccccgggatctgcagcctcaccccca
gggacgaatcctcacatgccccacactaatctcaacagcaaacatatctgtgctatttgt
ggtgaccgggcttcgggtaaacactacggagtttacagttgtgaaggttgcaaagggttt
ttcaaaagaacagttcgtaaggacttgacttacgcttgtcgggatgatcgaaactgtatc
atagacaagaggcagaggaatcgatgccaatattgccgatatatgaaatgcttaaacatg
ggaatgaaaagagaagatgttaaatgcagcaccgatgcagggcgccaaggatcatctgta
caagaagagagacaaagggtgaaggaaaagggagagggggaggtggagagcaccagcagt
gcaaattcagatatgccggtagagaaggtcctggaggctgaattagcagtggaaccaaag
acagacacctatatagatgcccagaaagatgcagtgacaaatatttgccaggcggcggat
aagcaactctttaccttggtggaatgggccaaacgaatacctcactttactgagctgcct
ttggatgaccaggtcattctactgcgagcaggttggaatgaactcctaatagccggcttt
tcacatcgatccattgtggttaaggatggtatactgttggccacaggtctccatgtgcat
agaagtagtgcccatcaagcgggggtgggaaccatttttgaccgtgtcctcacagaactt
gttgctaaaatgcgtgaaatgaaaatggataaaacagagctgggatgcttaagagctata
gttctctttaacccagatgctaaaggtctctctgctgtatcagaggtggaacagttgaga
gagaaagtgtatgcttcactagaagaatactgcaaaatgcactaccccgacgaaccaggg
cgatttgccaaactactgctacgattgccagcactaaggagtatagggctcaagtgtctg
gaacacttattcttcttcaaattaattggtgatactccaatagacactttcctcttagaa
atgttggagagtccttccccgagcagcacttga
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