KEGG   Ostrea edulis (European flat oyster): 125681885
Entry
125681885         CDS       T09123                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125681885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oed03041]
    125681885
Spliceosome [BR:oed03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    125681885
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd PRP4 DSE1_N ANAPC4_WD40 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st ASA1 Beta-prop_Aladin Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_EML WDR90_beta-prop_4th CFAP251_N Beta-prop_NOL10_N Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Vps41 PAC11 Ge1_WD40 Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_ACSF4 WD40_like WD40_RFWD3
Other DBs
NCBI-GeneID: 125681885
NCBI-ProteinID: XP_048778096
LinkDB
Position
2:98635346..98637216
AA seq 521 aa
MYFSDDEEELIVPQVKKPLIYGSLEEREKRRLAAGSTSGSFASDAIKAGKAAGNINITEG
GSYDIAEVDPNEGQAELLAVLEKKKKARQIQVSTDDSEVKANLRQLGEPICLFGEGPADR
RDRLRRTLAELGSVATDAILKKAEELSQKKSKDEENVTWYHEGTSVLKEARVWIAKYSIP
KAKERIRLQKEEKLIPTAKKNAQLQDLNKRVRAITNECSQIGDVRPLSYCEFSPNGKILA
VASWSGLCKLWSVPDCQLIRQLRGHSCNVGAIVFHPKATLSLDDNSCCMASCSQDGTVKL
WNLVSDEPVADIEGHSPYRVSRLKYHPSGRFLGTCCFDNSWRLWDLEVQEEILHQEGHSK
PVYDISFQGDGALAATGGLDAFGRIWDLRTGRCIMFLEGHIKSVFSVDFAPDGYHVATGS
EDNSVRIWDLRQRKCVYTIPSHKNIVSKVKFQPNHGSYLLSASYDCTSKVWAHPTWAPLK
TLAGHEGKVMGADISPDLKYIATVSYDRTFKLWTTELQGGI
NT seq 1566 nt   +upstreamnt  +downstreamnt
atgtatttttcagacgatgaagaggaactaatcgttccgcaggtaaagaaaccattaata
tatggaagtctagaggaaagagaaaagcggagacttgcagctggcagcacttcaggatct
ttcgcttcagacgccataaaagctggtaaagctgctgggaatataaacatcacggaggga
gggtcctatgacattgcagaagtagatcctaatgagggacaagcagaattgctagctgtt
ctagaaaaaaagaaaaaggccagacagattcaggtgtcgacggatgactctgaagttaaa
gctaacctcagacaattaggggagccaatctgtttgttcggagagggtccagctgacaga
agagaccgcctcagaagaactttagctgagttgggctcagtggccacagatgcaatattg
aaaaaggcagaagaattatcgcagaagaaaagtaaagacgaggagaatgtaacttggtat
catgaagggacttctgttctgaaagaggcaagggtatggatagcaaaatactcaattcct
aaagctaaagagagaataagattacagaaagaagagaaactgataccaacagcaaagaaa
aatgcccagcttcaagaccttaataaacgagttagagcaatcaccaatgagtgcagtcag
atcggagatgtcagaccactttcatattgcgagtttagtcctaatggtaaaatacttgct
gtagcatcgtggtcaggcttgtgcaagctgtggtctgtcccagattgccagctcattcga
caattaaggggtcatagctgcaatgttggtgccatcgttttccatcccaaagctacactt
tcactggatgacaattcatgctgtatggcttcctgtagtcaagatgggactgtgaagcta
tggaatcttgtaagtgatgagcccgtggcagacatagaaggccacagcccatacagagtg
tctcgtctgaagtaccacccgtcagggcgattcttgggtacctgctgttttgacaactcc
tggagactttgggatttagaggtccaagaggaaattcttcatcaggagggtcacagtaaa
ccggtttatgacatctccttccagggggatggtgctttagcggcaacaggagggcttgat
gcatttggaagaatttgggatctaagaacggggagatgcattatgtttttagagggccat
atcaagtcagttttttctgttgattttgctcctgatggttatcatgtcgctacaggaagt
gaagacaactcggtgaggatttgggatctaaggcagagaaaatgtgtatataccattcca
tctcacaagaatatagtgagtaaagtgaaattccaacccaaccatggcagttacctatta
agtgcatcatatgattgtacatccaaagtctgggcccatccaacgtgggcaccattaaaa
acgttagcagggcatgaaggaaaagtaatgggtgcagacatttctcctgacctgaagtac
attgcaacagtgtcttatgacagaacattcaaactgtggaccactgaactgcaaggagga
atttaa

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