Ostrea edulis (European flat oyster): 125681974
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Entry
125681974 CDS
T09123
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04137
Mitophagy - animal
oed04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125681974
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
125681974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oed04121
]
125681974
Enzymes [BR:
oed01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
125681974
Ubiquitin system [BR:
oed04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125681974
Multi subunit type E3
ERAD complex
125681974
LMBR1L-GP78-UBAC2 complex
125681974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
zf-C3HC4
CUE
zf-rbx1
zf-C3HC4_3
G2BR
zf-RING_11
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
zf-RING_16
Prok-RING_4
Polyoma_lg_T_C
zf-C3HC4_4
zf_RING_Vps8
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
125681974
NCBI-ProteinID:
XP_048778287
LinkDB
All DBs
Position
1:74353821..74406235
Genome browser
AA seq
659 aa
AA seq
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MPVILLERIPLPSLQTYTSVSVLVLSVALYYAYHTVTNFDMNTVSMVDFDDGVTVEPVID
GEVPTYYQEEVNLTLPYDSVGWNMFHILTAEVWSVWILVNSAYCCLILLGKLIQKLVFGD
LRVAEEQHLKDKFWNFLFYKFIFIFGVMNVQTLEEVVSWVAWFTILGFLTLLTQISKDRF
EYLSFSPIAARGVHIKLLSLLCVILLCSFALLFLSGYVGLQAGPTIFAFLAAECLLLGIR
ALYVVVRYVIHLLDMTVTSVWENKSIYIYYTELGFELSALAVDFTHHLHMLLWGNIFLSM
ASLVICMQLRYLFYEFKRRINRHKNYRKVVQNMEARFPMATKEELQVHNDNCAVCWERME
SSRKLPCGHLFHNACLRSWLEQDTSCPTCRLSLSEGTQVDPNNEVPEEHGATPPPPPQQQ
LQNHFTNHFFHFDGSRYVSWFPSFSVEVTHTQLLPGGRQRPVHTSQLDSMARQVQSVFPH
IPMSVITEDLRNTRSVDFTIENVLEGRVQVPPPGLATMAALTDSEEGSDDNDAQPSTSQP
SSGALQLARTSEGTEEVSSIMDDNVPFLMETKPSDETHFRTGGRFSKSTTERETMLQSRK
EQMLQNARKKYLSRQTNSQMEAASQSDELSGTLENSTQSDLQKRRELSFQAAQRRFTSS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgatcttattagaaaggatccccctcccgagtttacagacctatacgtctgtg
tctgttctggtcttgtcagtggcgttgtactatgcgtatcatacagttaccaattttgat
atgaacacagtaagtatggtggattttgatgatggagtaacagtggaaccagtgatagac
ggtgaagtaccgacatattaccaggaggaagtcaatctaaccctcccttatgacagtgta
ggatggaacatgtttcatatattgaccgctgaagtgtggagtgtctggattttggtcaac
tcggcatactgttgtttaattctccttggaaaattaatacagaaactggtgtttggagac
ctcagggtcgcagaggaacagcacttgaaggacaaattttggaacttcctgttctataag
tttatcttcatcttcggggtgatgaacgtgcagactctggaggaggttgtatcgtgggtc
gcgtggtttaccatcctcggcttcttaaccctcctcactcagatctccaaggacagattc
gaatatctctccttctcccctatagctgcccgaggggtccacatcaaactactcagcctg
ttgtgtgtaatcttactgtgtagctttgccttgttgttcctcagtgggtatgttgggctg
caggctgggccaaccatttttgccttcctggctgcggagtgccttctattgggtatcagg
gctctatatgttgtagttaggtatgtgatccatctgttggacatgactgtcaccagtgtc
tgggaaaacaagtctatctatatctactacacagaactagggttcgaactttctgcttta
gctgttgattttacacaccatcttcacatgttgctttggggcaacattttcctgagcatg
gccagtcttgttatttgtatgcagctgagatacttattctatgaattcaaaagaagaatt
aatcgccataagaattacagaaaagtggttcaaaatatggaagctagatttccaatggca
acaaaagaagaactgcaagttcacaatgataattgtgcagtgtgctgggagagaatggag
tcttccagaaaactgccctgcggacacctgtttcataatgcctgtctgagatcatggttg
gagcaagacacctcctgtcctacctgtagattatctctgagtgagggaacacaagtggac
cccaacaatgaagttccggaggagcacggtgccaccccacccccacctcctcagcaacag
ctgcagaatcactttactaaccacttctttcattttgatgggtcacgttatgttagctgg
ttccccagtttctctgtggaagtgacacacacccagctgttaccagggggaagacagaga
ccagttcatacctctcagctggacagcatggcacggcaggtacagtctgttttccctcac
atacctatgagtgttatcactgaagacttaaggaatacaagatctgtggatttcaccatt
gaaaacgttctagagggcagagttcaggtgcctccgcctggtttagctacaatggctgcc
ctgacagactctgaggaaggtagtgatgacaatgatgcacaacccagtacttcacaacca
tccagtggagccctacagctggccaggaccagtgaggggaccgaggaggttagcagtata
atggacgacaatgttccattcctaatggaaacaaagccaagtgatgaaactcatttcaga
acgggaggaagattttcaaagtctaccacagagagggagaccatgctacagagtagaaaa
gaacagatgttacagaatgctagaaaaaaatatttaagtcggcagacaaattcccaaatg
gaggcagcatctcaaagtgatgaattatcagggactctagagaatagtactcagtccgac
ttacagaagaggcgggaactctcatttcaagcggcacagaggcggttcaccagttcataa
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