Ostrea edulis (European flat oyster): 125682164
Help
Entry
125682164 CDS
T09123
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125682164
09124 Replication and repair
03420 Nucleotide excision repair
125682164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125682164
03400 DNA repair and recombination proteins [BR:
oed03400
]
125682164
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125682164
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125682164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ANT
Motif
Other DBs
NCBI-GeneID:
125682164
NCBI-ProteinID:
XP_048778515
LinkDB
All DBs
Position
2:complement(18667415..18683306)
Genome browser
AA seq
461 aa
AA seq
DB search
MASGATGKKLECKDLHGYLKTLPHNILDKLYNHPATCLAVFRQLPQLSKHYVMRMLFIEQ
PVSQSVVGLWVTNKHNEEHRYASKVLSDMRVWHEQQMQGGLLGWILNETFRSNMRVALLG
GGKDSQYSAGPLPPDKHAKDVPFLDKYALERWECVLHFMVGSTEGTEGVSRDIIDVLLHA
GLMTRDGVDPLPSITPAGFQFLLMDIGSQVWYFMLQYLDTVEARGMDLIDCLSFLFQLSF
STLGKDYSTELMNEGQQRFLQHLREFGLVYQRKRKIQRYYPTRLALNLSSGSSDFTTVGK
NTGFLMVETNYRVYAYTDSPLQVALVALFCEMLYRFPTFSVGNLTRDSVRDALVRGITAD
QIISFLKTHAHPKMTKNTPVIPSTVTDQIRLWELERDRFKFSEGVLYDQFLSQSDFELLR
DYAKDLGVLLWDNAIKRVMVVTKGGHDDVKRYWKRQKQANS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtggtgcaacaggaaaaaagcttgaatgtaaagatttgcacggctacttaaaa
acactacctcacaatatactcgataaattgtacaatcatcccgccacctgtcttgcggtg
tttcgacagcttcctcagttgtccaaacactatgtgatgcggatgcttttcatcgaacag
ccggtgtcccagtctgttgttggattatgggtaaccaataaacacaatgaggagcatagg
tatgcttccaaagtgctgtctgacatgagagtttggcatgagcagcaaatgcaaggaggt
ctgctgggatggattctgaatgaaacatttcgctcaaacatgagagttgctttacttgga
ggaggaaaggattcccagtattcagcagggcctcttcccccagataaacatgccaaagac
gtaccatttctggataaatacgcccttgaaagatgggagtgtgttttacatttcatggtg
ggatctactgagggtacagagggagtgagccgtgacatcattgacgttctcctacacgca
ggccttatgaccagggacggtgttgacccactgccttccataactcctgcaggctttcag
tttttgctgatggatattgggtcacaagtttggtattttatgctgcagtacttggataca
gtggaggcccgcggtatggatcttatagactgtttgtcatttctatttcaactcagcttt
tcaacgctaggaaaggactattctacagagttaatgaatgaaggccagcagaggttttta
caacatctgagagaatttggacttgtctatcaaagaaagaggaaaattcagagatactac
cccactaggctagctctcaatctgtcgtctggttcgtccgatttcaccaccgtcggaaag
aatactggttttctaatggtggaaactaactacagagtatatgcatacacagattctcct
ctgcaagtggcactggtagcattattttgtgaaatgttatacagatttccaaccttttct
gtggggaatctgacacgtgacagtgtgagagatgccttagtcagaggaatcacggcagat
cagatcatatccttcctgaaaacccacgctcatccgaaaatgacaaagaatacacctgtg
attccgtctaccgttactgaccagattagactgtgggaattggagcgcgacaggtttaaa
ttctccgaaggtgttttgtatgaccaatttctgtcacagagcgattttgagctgcttcgg
gattatgccaaagatttaggagttctgctttgggacaatgctataaagagagtgatggtg
gtgacgaaaggtggccatgatgacgtcaaacgttactggaagcgacagaaacaggccaac
tcctga
DBGET
integrated database retrieval system
