Ostrea edulis (European flat oyster): 125682614
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Entry
125682614 CDS
T09123
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125682614
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oed00536
]
125682614
Glycosaminoglycan binding proteins [BR:
oed00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125682614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Laminin_G_3
DUF1554
Laminin_G_2
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
125682614
NCBI-ProteinID:
XP_048779248
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All DBs
Position
2:complement(106874445..106944108)
Genome browser
AA seq
1273 aa
AA seq
DB search
MWFRNILGLILTQTLFLLTPVRGQFESDDNIDVLGAIGVPGSKRGIKYAQGIDGFPAFEI
QDNAHIKEPAQAFFKSQIYKDFAIGMTVKPASINGGFLFAVKNLYNTVVQFGVELTKNKL
VLYYTSNVRFASTSKKLVSFDIGNIHNKWTKLSLKVQGDEVTLYKNCAKVETVRVTGKNG
PLDVEGGANMYVGQGGENFKNKFTGAIQELKIYKDPKEATNDDCDDQIYGSGSGNSGVGP
DTGIIAPIITPPPIFNKGEKGERGVQGFKGDKGDQGLPGNSSKVTGTGEKGEKGEPGEPG
VKGDTGSPGKDGADGAPGEVGLPGQGGIPGRKGDHGDQGRPGVPGIGVQGPKGEPGAPAV
INMKDIEDFIQTRIPGASDGERGEKGDQGERGEQGPRGDTGLPGIPGSDGLIGPTGPPGL
KGEAGESVVGPQGPAGKDGVPGATGQKGDQGERGLPGLPGPTVTVEGSGDGDSEPGLPGT
PGLPGEKGERGDIGPQGPKGEPGTFDGDINDLIGPAGPRGLTGNPGLPGVPGPAGLPGKE
GPMGPLGLRGEDGAPGSDGRDGQLGPEGPAGPQGDIGPRGLPGAPGTPGLPGQTGAPGPP
GTCSGSPSRGDITGLGDDLEFSGDGCGGGDCTCIGTPGRDGINGTEGPRGLPGSPGVRGE
KGERGLQGIAGKEGPAGKRGEAGPTGETGRQGPQGPQGETGAMGSPGLPGVSGEPGLTGL
KGAKGEKGDATVGTPGKDGKDGKQGLPGPPGPPGPSISVVDPGSGVGEVLEGSPGEKGER
GEPGLEGKPGTPGLPGVDGKKGDTGDRGEKGTVGDTGAEGPSGEKGDKGDTGPVGPPGLP
GTGGSGGAVTGTKGEPGAPGLPGKIGKIGPRGLPGRKGDIGMPGIPGRRGFRGRKGDRGF
GLRGFKGFQGPPGLPGPPGQGLGPSGEIIRGAKGERGDRGLPGIPGTGRDGSKGERGSRG
YPGQKGDDGKKGEPSYIQGPPGPPGPQGHSGGGNGNGGLVTFKDFSNMLYAAKSLPIGTM
TFTLKEEEVYVRVTEGFKQITGRTIRLSSNIIRLPSEKLTDSTTVASTTSTASTASTSPA
TTPKPIPLPGPDSVMQADQPRLYMYALSTPKTGKLRGLTGADYACYKEAYYSGMYGRTFR
AFLASKTQNLYSIVSDKNIPIVNKNDTIIFSSFNDLLRTGGRFNRNVKIYTFNGEDVMTS
SKWPEKMVWHGADSQGNKMNDKECSDWRSDSSNRVGYAGSLKDGKLVDMIEYSCRKQLIV
LCIEVLPKKQRKP
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgtggtttaggaatatattggggttgattttaacccaaactttatttttactgacaccg
gtgcgaggacaatttgagtcagatgataacattgatgtattgggagctattggtgtccca
gggtcaaagagaggtattaagtatgcgcaagggatagatgggttccccgccttcgagata
caagacaacgcccacattaaggaacctgctcaagcattttttaagagccaaatttataaa
gactttgcaataggcatgactgtaaaaccagccagcataaatggtggttttctatttgca
gtgaaaaatctctataacactgtagtgcagtttggtgtagaattgacaaagaacaaatta
gttttatactatacttcgaatgttcgatttgcatcaacgtctaaaaaattagtgtcgttt
gacattggaaatattcataacaagtggaccaaattgtctttaaaagtacaaggtgatgaa
gtgacgttatacaagaattgtgccaaagtggaaacggtaagagttacgggaaagaacggc
ccattagatgttgagggaggagctaatatgtacgttggacaaggtggagaaaatttcaag
aacaaatttacaggtgccatccaggaactgaagatatacaaagatccaaaagaggcaaca
aatgacgactgcgatgatcagatttatggaagtggctcaggaaattcaggagtaggtcct
gacactggtatcattgctccaatcataactcctcctccaatttttaacaagggggagaag
ggtgaacgtggagtgcagggttttaagggcgacaagggagatcaggggttacctggaaat
tcctcgaaggtcacaggtactggagaaaaaggtgagaagggggaaccaggagaaccaggt
gttaaaggtgatacagggagtcctgggaaagatggcgctgatggagccccaggtgaagtg
ggacttccaggccagggcgggattccaggccgaaagggagaccatggggaccaaggccga
ccgggagtaccaggcatcggtgtacagggtcccaagggagaacctggggcaccagcagtc
atcaacatgaaggacatcgaagatttcattcagaccagaattccaggggcaagtgatggt
gaacgaggcgagaaaggagatcaaggagagaggggtgagcagggacctcgaggagacacc
gggctcccaggaatccctggcagtgatggccttatcggaccaacaggacctccaggactc
aagggtgaagccggtgaatcagtagttggacctcaaggacctgctggtaaagatggcgtc
ccaggggcaacaggtcagaagggagaccaaggcgagagaggactgcctggtctcccggga
cctacagtgacagtggaggggtctggtgacggtgatagtgagccaggactaccgggtacc
ccaggactgccaggagagaagggagagagaggagacataggacctcagggtcctaaagga
gagccaggtacatttgatggcgacattaacgatctgattggaccagccggaccgcgggga
ctaacaggaaatcctggacttcctggagtgccaggaccagcaggcttacctggtaaagaa
ggccccatgggaccactaggactcaggggtgaggatggagcaccaggctcagatggacga
gatggacaactgggaccagagggaccggccggtccacaaggcgacattgggccccgtgga
ctgccaggtgccccagggacccctggattacccggtcagactggggcccccggccctcca
ggaacgtgttccggctctcccagccgtggagatatcactggtctgggtgatgatttggag
ttttctggagatgggtgtggtggaggagactgtacctgtattggcaccccaggacgagac
ggaattaatggcacagaggggccccgaggtttaccggggtccccaggagttcgaggtgaa
aagggagagaggggattacaaggcatagccggaaaggaggggcctgcaggcaaaagggga
gaagcaggaccaacgggtgagactggacgacaagggccgcagggtccccagggtgagaca
ggtgcaatgggatcccctggtcttccgggtgtgtcaggggaaccaggtctgacaggactg
aagggggcaaagggtgaaaaaggagatgccactgttggaacaccaggtaaagacggaaaa
gatggcaaacagggacttccaggcccaccagggcccccggggccatccatcagtgtagtg
gacccagggtcaggtgtaggggaagttctggaggggtcacctggtgaaaagggagaaaga
ggagaaccaggcttagagggaaaaccaggtaccccgggactgccaggtgtggatgggaag
aaaggtgatacaggagacaggggagagaaaggcacggtgggggatactggagctgaggga
cctagtggtgagaaaggggataagggtgatacagggcccgttggaccgcccggtctaccc
ggaacaggaggatctggaggggctgtgacgggaacaaaaggagaaccaggagcccctgga
ctgcccggaaagataggtaaaattggaccacggggcctaccaggtcgcaaaggggacatc
ggaatgccagggataccgggtcgtagaggtttccgaggaaggaagggtgaccgtggattt
ggactgcgtggatttaagggatttcagggccccccaggtcttcccggtcccccgggccaa
ggactcggtccaagtggagaaatcattcgtggagccaagggagaacgtggagacagaggt
ttgccaggaatcccgggaacaggacgtgatggttcaaaaggagaacgtggttccaggggt
tacccaggccagaagggtgatgatggaaagaagggtgaaccctcgtatatccagggacca
cctggtccccccggaccccagggacacagtggagggggcaatggaaatggagggcttgtt
acctttaaagatttcagcaacatgttgtatgcagccaagtctcttccgattggcacaatg
acctttactctcaaagaagaagaagtttatgttcgagtgacagagggattcaaacaaatt
acgggacgaacaattcggctgagttccaatatcatcagacttccatcagaaaaacttacg
gatagtactactgttgctagtaccactagtactgctagtaccgctagtacctcgccagca
accacccccaagcccattccacttcctgggcctgatagtgttatgcaggcagaccagcct
aggttatacatgtatgccttgagcaccccaaagactgggaaactccgtggattgacagga
gctgactacgcctgttataaagaggcttactactccggaatgtatggaagaaccttcagg
gcattcttagcctcaaagacgcaaaatctgtactccattgtgtcagacaaaaatattcct
attgtcaacaaaaatgatacgatcatattcagctctttcaatgacctgttaaggacggga
ggaagatttaacagaaatgtcaagatctacacatttaatggagaagatgttatgaccagc
tctaagtggcctgagaagatggtctggcatggggcagacagtcaaggaaacaaaatgaat
gacaaagaatgttcagactggcggtcggacagttccaaccgggtcggatatgcaggttca
ttgaaagatggaaaattagtagatatgatcgaatacagctgtcggaaacaactgatagtg
ctctgcattgaggttttaccaaagaaacagagaaaaccttaa
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