Ostrea edulis (European flat oyster): 125682802
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Entry
125682802 CDS
T09123
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125682802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125682802
03036 Chromosome and associated proteins [BR:
oed03036
]
125682802
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125682802
Coactivators
SAGA/TFTC/STAGA complex
125682802
Chromosome and associated proteins [BR:
oed03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125682802
STAGA complex
125682802
TFTC complex
125682802
SAGA complex
125682802
SLIK complex
125682802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_HPS5
WD40_RFWD3
WD_LRWD1
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
WD40_like
Beta-prop_WDR35_TULP_N
VPS8_N
eIF2A
Motif
Other DBs
NCBI-GeneID:
125682802
NCBI-ProteinID:
XP_048779348
LinkDB
All DBs
Position
2:39889655..39913921
Genome browser
AA seq
688 aa
AA seq
DB search
MAGNEVPFTGSLTTQGNMQQTLPLQNVPKADVSDKQTLLAVLQFLKKNNLKGTEELLKRE
ASIKDDDVRPQATSQSETDVSHALAAYKSADDPSLFADYYTDLKTFIESCLDAHKVELSM
ILYPVFIHMYLEMVYNEHESYAILFFRRFSNEQEDFYQDDLRKLSTVTKKEHMKGNELME
SFKASKFVIKMSRDSYNHLKRYLQENKMKPLLTIIQEHLFIDVFDGVPRTKQQIDATSGA
LLGESERDANKVKVFYGLLKEPDINMPIDDEDEATEGDDKPKKKKPKKDPLMMKKSKNDP
HAPALTRIPLPELKDQDKMEKIMAYREALKRVKVGRDNLPTICFYTLLNSYQGVTTVDMS
EDSSLMCAGFADSTIRVFTTSSQKLRSMKTIAELDSIDKDADDVLERMMDDRSSTDCKLL
TGHSGPVYAARFSKDRKYLVSCSEDGTVRLWSLLTWTNLVCYKGHNHPVWDVEFSPYGHY
FVSVGHDRTARLWATDHHVPIRIFSGHLSDMDCVKFHPNSNYIATGSNDRVVRLWDILNG
NCVRVFTGHKGSVHALCFSPDGRFLASSGVDSIVLLWDIATGGLLAQMKGHTETVYSLCF
SRDGAVLASGGLDNSVKLWDVIKVLQEVDTEADTSIPSSVHVNDSPGLLIGSWATKATPV
LCVHFTRKNLMIASGPAAIMEDRSPHKT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcaacgaagttccgttcactggttctttgacaacacaagggaatatgcagcaa
actcttcctcttcagaatgtcccaaaggcagatgtgtccgacaaacaaacacttttagca
gttttacagtttttaaagaaaaataatttgaaggggacagaagaattgttgaaaagagaa
gcatctattaaagatgatgatgtccgtccacaagcaacttctcaatcggaaaccgatgtt
tcacatgctttggcagcttacaaaagtgcagatgacccaagtctgttcgcagactattat
actgatctcaaaacttttatagagtcttgcttggatgcccacaaggttgagctttccatg
atactctatccagtatttatacacatgtaccttgagatggtctacaatgaacatgaatct
tatgctattttgtttttccggagattttctaacgaacaagaagatttttaccaggatgat
ttaagaaagttatcaactgtcacgaaaaaagaacacatgaaaggaaatgagctaatggag
agtttcaaagccagtaaatttgtgatcaagatgtctcgagattcttacaaccatctgaaa
cgttatctacaagagaacaagatgaagccattgttaaccatcatacaagaacacttattt
attgacgtatttgatggagtaccaagaacaaagcaacagattgatgccacaagtggagcc
ctactaggagagagtgaaagagatgccaacaaagtgaaggtgttttatggtctgttgaag
gaacctgacattaatatgccaatagatgatgaagatgaggctacagaaggagatgacaaa
ccaaagaaaaagaaaccgaagaaggaccctcttatgatgaagaaatccaagaacgatccc
catgcacctgcactcaccagaattcctcttcctgaactgaaagaccaggacaaaatggag
aagattatggcctacagagaggctctaaagagagtgaaggttggcagggacaatttgcca
acaatatgcttctacacgcttctcaactcataccaaggggtaacaactgttgacatgtca
gaagactccagcttaatgtgtgcaggctttgcagactctaccattcgtgtgttcactaca
tccagccagaaactgagaagcatgaagaccattgctgaactggacagtatagataaggat
gcagatgatgttctagagaggatgatggatgacagatcgtccacagactgtaagctccta
acgggtcacagcggcccagtgtatgctgctagattcagtaaagacaggaagtacctcgtt
tcctgttcagaggatggcacagtgaggctatggagcttgttgacgtggacaaacttggtc
tgttacaaaggacacaaccatccagtgtgggatgtggaatttagtccatatggtcactac
ttcgtgtcagttggtcatgacaggacggccagactgtgggccacagaccatcatgtacct
atcaggatattttctggacatctgtcagacatggattgtgtgaagtttcatcccaattct
aactatatagctacaggatcgaacgaccgtgttgtaaggctgtgggacatcttaaatggg
aactgtgtcagggtcttcacaggtcataagggatcagtacatgctctttgtttttctcca
gatggaaggtttttagcttcttcaggtgtagacagtattgtactgctgtgggacattgcc
acggggggacttctggctcagatgaagggccacacagagactgtatacagtttgtgtttc
agcagagatggagctgtgctagcctcaggtggtttggataacagtgttaaactgtgggat
gtcatcaaagtattgcaagaagtggatactgaagcagacaccagcataccaagttctgta
catgtaaatgacagcccaggacttctgattggttcctgggcaaccaaggccacccctgta
ctctgtgttcacttcactcgcaagaacctcatgatagccagtggcccagcagcaattatg
gaggataggtctcctcacaaaacttga
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