Ostrea edulis (European flat oyster): 125682931
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Entry
125682931 CDS
T09123
Name
(RefSeq) uncharacterized protein LOC125682931
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125682931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oed03041
]
125682931
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125682931
Spliceosome [BR:
oed03041
]
Complex C
Other components
Step II factors
125682931
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
DEAD
IBR
AAA_22
IBR_2
IBR_1
AAA_19
NAT10_TcmA_helicase
ResIII
WHD_HA2
KH_DEAH11_2nd
OB_NTP_bind
AAA_30
ABC_tran
nSTAND_NTPase5
HA2_C
KH_DEAH11_1st
Flavi_DEAD
RsgA_GTPase
nSTAND3
RRM_DEAH11
AAA_29
Motif
Other DBs
NCBI-GeneID:
125682931
NCBI-ProteinID:
XP_056015010
LinkDB
All DBs
Position
1:71677142..71687151
Genome browser
AA seq
1715 aa
AA seq
DB search
MDNRNNRRSNANRGRGNQRRGGADRRNYRDRKQSDVTERFPQRRATQKETPKEMLHEKTI
RLLTEPGPSYNLIVHRPFKEEKDFLEYLQERDLPSTLEFDIESFTLSSNGLSASVYIHFP
CNNAYRQFQSWMRQNKKLGFVYRFQRGEAAKVSKEFIDKNLKNIEEKSTYILEMHREKIS
NIKQKLSDFCGKDEHKKRSKYISLTEYESKEMHKGSLQDKISELEAQEIEFENSVQQIKD
GILKFEGCTVQQEDIDELLRRYEIEYSRLEQALPIYAQRTRIVTTILKNQVCVLLGETGS
GKSTQLTQYLLQSKLSSEGRIVCTQPRKVAAASLAQRVSSEMKSNVADIVGYQCGIQKKV
SDHTKVVYMTDHTLLNECLKDPFLNDYSCIIIDEAHERSIYTDLLLGMIKKCLHRRSDIR
VIVTSATIDPDVFVRYFEVCPVLKVSGRMYPVDIEWETIASDEKLETYDRKAVEKTLEIH
EKEDTGDILLFLTGQMEIEKCIDSLRWELEGKTDHWILPLHGKLQTEEQNRIFKETPQGK
RKIVVSTNLAETSVTIPGVKYVIDTGLTKEMLYDPEKKVSSLRVVKITKSSAEQRKGRAG
RTAPGKCFRFYSKEDYDNMKASSVPEIRRIHIGHAILKILQLNLNPLEFDFVEPPPHNSM
EAAFQQLVKLGAVEDGRITKLGKWISQLPLEPNLGVLVYDAIERKVGLEAIIIAASCAVS
GNLFYRAGTEEQKDTCDKLKIPFCHSKGDHFTFLSVFQKWHIVPEKEKGQWCLDNSINGR
AMRNIRDTVNEIRFILKKDMNISLKFELPEGSRNERGLQNLLLKAFQSNLCYFLGHEKAG
YYFIDKDQHRIVHPSASFQSLARYPTWVIVEKVLNTSREYAVNITEVNENDVQEALRRKE
LEFDMTRIQRKKVEPIYTEYVGPELHRQFVGPKWKNAKDIEKQLKSENADSVFVIDADRD
KGEISIYAPEDKDELSIKAFKMAIDPKRENIRNEKVTFSIFPRCYNVKVSLGPGGLVQDL
LCEDDYNSVYVYCTEECYPDEKLEEWLKRFGDIKKFVKKSPANTSLRYRGEAVFESCESA
KRAVLTRDKSSNIYVNPPAWKTNDNDAFKAKITWCRRKPREYGFVQIRNPETLATILEIC
TLTEISVGGRLVKISRSATKPDELYIQGLHSLVNEDILREGIVDAFKISDNDIGKTFIPR
QKVFTTKEISDSHRRRLERQIGQHVDMKKFKVFLKEPGEQDYDFTGYITFTDPEKGFEAC
EKLHKTISINDSVVSIIPEIHTRLYVLERVFKRVEKGIKAFSSKAKKEDGVFIDIKQNAA
GNYILRIEAGSLDRMVQTRDTILDLLQGQDLNMEKIPSLRSLFTYDGRSKIEKIMEKTHT
LIILNDRNTTISIHGRESDRSLAITKIEKYIKKLDSLKLRVIDLKSDTTPPGLMKSIIQM
HGIELKGLKDLSKLSSIELDHRKHRIKILGSEGAMQLALKDIEEITKTLLSSSQDKDRSS
DPECGICLSGVPETELYRLESCGDPYCRDCVKLHLNSVISSREFPLRCCRDGCDMLWSWS
DVNNMKKFGFCTLQTVINASISCYVAQNPDKARYCITPDCQMVYKVSQTGGRFVCSLCHT
ALCTKCHVEYHAGSSCAIYEKERQINENGLREWISGDRLNRDLCPKCYIGIERYGGCQHM
QCSQCNCHICWICKAYFATSTECYRHMYESHNTYV
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atggacaacagaaataacagacgttcaaatgctaatagaggaagagggaatcagagacga
ggtggtgcggatcggagaaattatagggatcgaaaacagagtgatgtgacggaaagattc
ccgcagagacgtgctacacagaaggagacaccgaaggaaatgttgcacgagaagacgata
aggctacttactgaaccaggtccgtcatacaatctcattgttcataggccatttaaagag
gagaaagattttttagaatatttgcaagagagagacttaccatcaactctcgaatttgac
attgaatcatttacactgagttctaatggactatcagcttcagtttatattcatttccct
tgtaacaatgcctacagacagtttcaatcatggatgagacagaacaaaaagctaggtttt
gtatatcgtttccaaagaggggaggctgcgaaagtaagcaaggaatttattgacaaaaat
ctcaagaacattgaggaaaagagcacctatattttggagatgcatagagaaaaaatttca
aatatcaaacagaaattgtccgatttctgcgggaaagatgaacataagaaaagatctaaa
tatatatcattgactgaatatgagagcaaggaaatgcataagggctcacttcaagataaa
atttcagaactagaagctcaagaaatagagtttgaaaactccgttcagcaaatcaaagac
ggcattttaaagtttgagggttgtactgttcaacaagaagacattgatgaacttctcaga
agatatgaaatagaatattcgcgactggaacaagctctgcctatttatgcgcagcgtact
cgaatagtcactaccattttaaaaaaccaggtatgtgttcttcttggcgagacgggatcg
ggaaaaagtacacaattgactcagtatttgcttcagtctaaactgtcctccgaaggtcgt
attgtttgcacacaaccaagaaaagtcgcagctgctagccttgcgcaacgagtctcaagt
gaaatgaagtctaacgtggcggatatagttggctatcagtgtgggattcagaagaaagtt
tcagaccacacaaaagtggtgtatatgactgaccacacactcctaaacgaatgcttaaaa
gatccctttctgaatgattactcctgtatcattattgatgaggcacacgagcgaagcata
tacactgatctgttgcttggaatgataaagaaatgtttgcatcggcgatcagacattcga
gtcatcgtgacatctgcaacaattgacccggacgtgttcgtccgatatttcgaggtctgc
ccagttctcaaagtatcaggtcgaatgtatcctgttgatatcgaatgggagactatcgcc
agtgatgaaaagttagagacttatgacaggaaagcagttgaaaaaacgttagaaattcat
gagaaggaagacactggtgacattctgttgtttctcacagggcaaatggaaattgaaaag
tgcatagacagcctacgatgggaactcgaaggtaaaacggatcattggatattgccacta
catggtaaacttcaaacggaagaacaaaacagaattttcaaagaaacaccacaaggaaaa
agaaaaatcgtagtttccactaatttggcagaaacatctgttacaatacctggggtgaag
tacgttattgatactgggcttacaaaagaaatgttatacgatcccgagaagaaagtaagc
tctttaagagtagttaaaataacaaaaagttctgctgagcaaagaaaaggaagagcaggg
agaacggcaccaggaaagtgctttcgattttattccaaagaagattatgataatatgaaa
gcatcttctgttccagaaattcggagaattcatataggtcatgccattttgaagatattg
caactgaatctgaatccccttgaatttgattttgtagaaccacctccccataactcgatg
gaggcagcttttcagcaattagtcaaacttggagcagttgaagatggaagaattacaaaa
ttaggcaaatggatatcacagcttccactggaaccaaatttgggagtccttgtttatgat
gccattgaaaggaaagttggattagaagctatcatcattgccgcatcttgtgctgtgagt
gggaacttgttttacagggctggtacagaggaacagaaagacacttgtgacaagctcaaa
attcctttctgtcatagcaagggagatcatttcacatttttgagcgtctttcaaaaatgg
catattgttccggaaaaggagaaaggtcagtggtgtttggataattccatcaatggaagg
gcaatgagaaacattcgggacaccgtaaacgagatcagattcattttgaaaaaagatatg
aacatttctctaaaatttgaattgccagaaggaagtcgcaatgaaagaggtttgcaaaat
cttttgctcaaagctttccagagcaacctttgttactttcttggacacgaaaaggctggt
tattattttattgacaaagatcaacataggattgttcatccgtctgcatccttccagtct
cttgcaaggtatccaacatgggttatcgttgaaaaagttttgaacacctctcgggaatat
gctgtaaatatcacagaggttaatgaaaatgacgtacaagaagccttgagacggaaggag
ctagagtttgatatgacaagaatacaaagaaaaaaagtagagccaatttatacagaatat
gtaggtccagaacttcataggcagtttgttggtcccaaatggaagaacgctaaagatata
gaaaaacaattgaaaagcgaaaatgcagattctgtgtttgtaattgatgccgacagggac
aagggcgaaatttcaatatatgcaccagaagacaaggacgaattgtcaatcaaggcattt
aaaatggctatcgacccgaaaagggaaaatataaggaatgaaaaagtaaccttctcaata
ttccctagatgctacaatgtcaaggtatctcttgggccaggcggactggttcaagatcta
ttatgcgaagatgattataactctgtgtatgtatattgtacagaggaatgttatcctgat
gaaaaattagaagaatggctgaaacgattcggtgatattaaaaaatttgtaaagaaatca
cccgcaaatacctctttaagataccgtggcgaagcagtgtttgaaagctgcgaatctgcg
aaaagagcagttttaacacgtgacaaatcttcgaatatttatgtcaacccccctgcttgg
aagactaatgacaacgatgcctttaaagcaaaaataacatggtgtcgaagaaaaccaagg
gaatatggatttgttcagataagaaatccagaaactttggcgactatacttgaaatttgt
accttaaccgaaatatcagtcggtggacgtctcgtaaagattagccgtagtgcgacaaaa
cctgatgaattatacattcaagggcttcattcccttgttaacgaagatattttgagagaa
ggaattgtcgatgctttcaaaatctctgacaatgacataggaaaaactttcataccacga
cagaaagtattcacaacgaaagaaatttccgattcgcatagacgaagacttgaacggcaa
attggacagcatgtggatatgaagaagttcaaagttttcctcaaagaacctggtgaacaa
gactacgattttacaggttatattacatttactgacccggaaaagggtttcgaagcctgt
gaaaaactgcacaaaactattagtatcaatgacagtgttgtttctataattccggagatt
cacacacgtctgtatgttttggagcgcgtattcaaacgggttgaaaaaggtataaaagct
tttagtagcaaagcaaagaaagaagatggagtgtttattgatatcaaacagaatgcagca
ggtaattacattcttagaatagaagcgggaagtttagacagaatggtccaaacaagagac
actatactagatctcctgcaaggtcaagatcttaatatggaaaagatcccttcgttgagg
tccttgtttacatatgatggaaggagtaagattgaaaagatcatggaaaaaacccacact
cttatcattttgaatgatagaaacacgactatttccattcatggcagagaaagtgaccgg
tcattggcgattacgaaaatagagaaatacatcaagaagttggattctttaaagctgcga
gtaattgacctaaagagcgataccacgcctcctgggctgatgaaaagtattattcagatg
catggcatagagttaaagggattgaaagatttatccaaactatcaagcatagaactcgat
catagaaagcacagaataaaaatattgggatcagagggagcaatgcagctagcattaaaa
gatattgaggaaataacgaaaactttactttcaagtagtcaagacaaagaccgatcatct
gatccagagtgcggaatttgtctcagtggagtacctgaaaccgaattataccggctggaa
tcgtgtggtgatccatattgtagagactgtgtaaaattgcatttaaattctgtgattagc
tcgagggaatttcctctacgttgctgtcgtgatggctgcgatatgctttggtcttggagc
gatgtaaacaatatgaagaagtttggattctgcactctacagactgtgataaatgcatcg
atttcatgttacgtagcacagaacccagataaagcaaggtactgtataactcctgattgt
caaatggtatacaaggtgagtcaaacgggaggtagatttgtctgctccctttgtcataca
gcgttatgcaccaaatgccatgttgaataccacgcaggttcctcctgtgcaatttatgag
aaagaaaggcaaatcaacgaaaatggacttcgagaatggatttctggagatcgattaaac
agggatctttgtccaaaatgttacataggaatagagcggtatggcggatgtcagcatatg
caatgttcccaatgcaattgtcatatttgctggatatgcaaagcttattttgcgacaagt
actgaatgttaccgccacatgtatgaaagccataacacttatgtgtag
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integrated database retrieval system
