Ostrea edulis (European flat oyster): 125683449
Help
Entry
125683449 CDS
T09123
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03022
Basal transcription factors
oed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125683449
09124 Replication and repair
03420 Nucleotide excision repair
125683449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oed03021
]
125683449
03400 DNA repair and recombination proteins [BR:
oed03400
]
125683449
Transcription machinery [BR:
oed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125683449
DNA repair and recombination proteins [BR:
oed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125683449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
125683449
NCBI-ProteinID:
XP_048780548
LinkDB
All DBs
Position
6:92465974..92482818
Genome browser
AA seq
564 aa
AA seq
DB search
MAARSEEVLLIVNNVRNKKTDGTLYMMGERLGWMQGSKSTFSISYLYADIKAQKISPDSK
EKVQLQLVLHDGGANTFHFINPKGRTMAITDRDSVKDLLQQLIPKFRRKLSSELEEKNRM
LQENPELFQLYKDLVVTGVITAEEFWASRKTQSSTKPEKSQTVGVSAAFLADIKPQTDGC
NGLKYNLTADIIESIFRTYPMVKKKHAEHVPHDMTESEFWTRFFQSHYFHRDRTVMGTKD
VFTDCAKSDEKDMKEEISDKPVDLFLDLTKISDSSLHEDYRGLTEDTRISNNVTNGTMIR
RFNHHSTMVLKACTKDSQSAQNSGPTDNAIQSSDTQKSSDNSKVNGVNMDESRPSTSKGY
WEPAAKKQKLQEKIHMDDLKDTNSKKNVNLQLHKMEGYLHGPTPVTMSRYTTSEDLLHAS
ESVMNDVHHWSHDLSNVLLGSQAIVILSELSPGGALLKGTSHSQLNQIVPLDVQEEVKAC
YSALLELLRHFWTCFPVSSKSLEEKVIRMKSTLERFQMAKLMPLKERLQDYHYTINMTSH
MEELLLAASRKFDMWQSRKSAIKR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaagatcagaggaggtactgctgattgtgaataatgttcggaacaagaagaca
gatgggaccctatacatgatgggagagaggctgggttggatgcagggcagcaagagcacc
ttttctatcagctacctgtatgctgacattaaagcacaaaagatctcaccagattctaaa
gagaaggttcaactccagctggttttacatgatggaggggccaacacatttcacttcatc
aaccccaaaggtcgaacaatggcaatcactgacagggacagtgtgaaagacctcctacaa
cagctgattccaaaatttcgacgaaaactcagcagtgaactggaggagaaaaacaggatg
cttcaggaaaatcctgagttgtttcagttgtacaaggatttggttgtgacaggtgtgatt
acggcagaagaattctgggcctcacggaaaactcaaagcagcacaaaaccagaaaagtca
caaactgtgggagtgtcagctgcgtttttggctgatattaaaccacagacagatggatgc
aatggattgaagtacaacctcactgcagacatcatagagtcaatattccgcacgtatccc
atggtgaaaaagaagcatgcagagcatgttccccatgacatgacggaaagcgaattctgg
acccggttcttccagtctcactacttccacagagatcgaacagtcatgggaacaaaagat
gtcttcacagattgtgccaaaagtgatgagaaggacatgaaagaagagatttcagacaag
ccagttgacctctttttggatctcacaaaaatatccgactcttctctacatgaggattac
cgtggactgacagaagacacacggattagcaacaatgtgacaaatggaaccatgattcga
agatttaatcatcactcaacaatggtgctaaaagcttgtacaaaagactcgcagagtgct
caaaactcaggtccgacagacaacgccatacagtcaagtgatactcaaaagagtagtgat
aactcaaaggtaaatggtgtaaacatggatgaaagtaggccgagcaccagcaaaggttac
tgggaaccagcagcgaagaaacagaaactacaggaaaaaattcatatggatgatttgaag
gacacgaatagtaaaaagaatgtgaatttacagttacataagatggagggttatttacac
ggtccgacgcctgtaacaatgtctcgttataccacaagtgaagaccttttacatgcctca
gaatcagtgatgaatgacgtccaccattggtcacatgatctttcaaatgtccttttgggg
tcacaagcaatcgtaattctcagtgaactgtcgccaggaggggcattattgaaaggcaca
agtcattcacagcttaatcagatagtaccactagacgtccaggaggaggtgaaggcttgt
tacagtgctctgctggaattactgcgacatttctggacctgttttccagtgtcatctaaa
tcgcttgaagaaaaggttataagaatgaaatccacgctggagaggtttcagatggccaaa
cttatgccactgaaggagaggctccaggactaccactatactataaatatgactagtcat
atggaggaacttctgttggcagcaagcagaaagtttgatatgtggcagtccagaaagtcg
gccatcaaaaggtga
DBGET
integrated database retrieval system
