Ostrea edulis (European flat oyster): 130048519
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Entry
130048519 CDS
T09123
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
oed03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130048519
09123 Folding, sorting and degradation
03018 RNA degradation
130048519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130048519
03041 Spliceosome [BR:
oed03041
]
130048519
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130048519
mRNA degradation factors
5'-3' decay
Lsm complex
130048519
Spliceosome [BR:
oed03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130048519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
130048519
NCBI-ProteinID:
XP_056001348
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All DBs
Position
7:76070400..76079029
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AA seq
96 aa
AA seq
DB search
MTSALESYVNRTVSIVTADGRIIVGTLKGFDQTINLILDESHERVYSTSQGVEQVILGLY
IIRGDNVAVIGEIDDDTDNGLDFNSIKAEPLNSVTH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacatcggcactggagtcttatgtcaaccggactgtttccatagtgacagctgatgga
agaattattgtggggaccctaaaagggtttgatcagaccatcaacttgatcctggatgag
agccatgagagagtatacagcacgtcacaaggggtggagcaagttattctgggattgtac
atcatcaggggagataacgtggctgttataggagaaatcgatgatgacacggacaatggt
ttggacttcaacagtatcaaagcggagcccctgaattctgtgactcactga
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