Ostrea edulis (European flat oyster): 130049249
Help
Entry
130049249 CDS
T09123
Name
(RefSeq) cartilage intermediate layer protein 1-like
KO
K24436
cartilage intermediate layer protein
Organism
oed
Ostrea edulis (European flat oyster)
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oed04990
]
130049249
Domain-containing proteins not elsewhere classified [BR:
oed04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
130049249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_5th
Ig_3
Ig_2
TSP_1
CILP_C
I-set
TSP1_spondin
CILP
ig
V-set
CarboxypepD_reg
Ig_6
TSP1_ADAMTS
Motif
Other DBs
NCBI-GeneID:
130049249
NCBI-ProteinID:
XP_056002603
LinkDB
All DBs
Position
8:complement(63193540..63202964)
Genome browser
AA seq
1063 aa
AA seq
DB search
MSSSVKFNSFDDRYVHTTEQPTIVAVSSDIAKKKIALIFGAIVVVGVIATVGVILGVVIL
KKDDNRGNPPDASINDAVDGKWTYWDSWSDCSVTCNTGTQRRTRTCTSPPPMYGGISCVG
ISLETRQCATWNCPDCARICPDGGNISPNCEICECVSSTIIGTVNDRTNFSVAEVDIFLS
YRPWSPIATTNVRGRYTVSNICFNSTSVFVKKGGFSTQNVTPRRLNNTHWEANFEIRKLE
KPWISRKPVSKIRFVGLSATFCCQANGFPMPQDFQWFKDDSILAGRGTDGNLLFNSVKKS
DIGTYFCKVTTEAGSVSSERVTLDVRDASVDTCNPEPTTKEENLPNGCFYNDNGDRKSVI
DVGHCPNTKCITNTLIDNGTCEDWWPNHCCDVSQMQSIEVECDGGFTYLITKVVSCKCRE
NEMSTIINGMAYGIRNSSRVPFNRGEVMVDGELKGITSATGYFSVTISGEVSRVVLNLRN
DRSGQLLDTTRVIDVAFGTTTSIDIHVPLKPEPKTFNTRLGFDIPLGTEKGQPSTTSLSI
AEDSIIDGDGNAFEGTANARVHFVDTRNLDDLNEMYGELRFTDEEGNAVDLETFGMVQLS
VEDTTGSPLYVNGKIKMSLDPTSFNLSNTGENLHLYSLDINTGKWVDRGLMSYNSSSGSS
RKRRSSGGNIEGVIADSIPIIDQTEIVNNIVQVRNTRLVSSININTDRPLIYRRITEYRN
VISRDTVTRDDACFVRVKAYSDFTFRNPEYGVRITAATKTKNGGPFRGRMSLVTSANNNG
ILCLPIFCNSEVYLMAEKGRTYYAGDRHILPPQAVSVNIANGTQIRLDSDYNNYLNGEGP
VFVYQRRSKCIAESTFIFQFAPLLKEGIRDSLSGDSIHNQLNSWYTEPANSPFRRTCFMK
VKVDSIDHSLEATGVSMMDHTSNIYVGRFKAPLIWDETTNNRREKAACVEFRCPGRLIDG
TTTINDVATLLRVQILSQEGHFCNITNVAAGLNIVRFPGPLGEGFQFRADPNDNYGSGMG
VYIRTFPFYAAEATCRTGLDSPNLSPIMKPNVNPAVEFQCIGI
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgagctctagtgtaaaattcaattctttcgacgatagatatgtccacacaactgaacaa
cctacaatcgtcgctgtatcgtctgatatagcgaaaaaaaagatagccctgatatttggt
gccattgtcgtggttggagtaattgcgactgttggggtaattctgggtgttgtcattctg
aagaaagatgacaaccgcggtaatccaccagatgcttctataaatgatgcagtagacgga
aaatggacttactgggactcgtggtctgactgcagtgtaacatgcaacacagggacacaa
cggcgcacccgaacctgcacgtcccctccaccgatgtatggggggatatcatgtgttgga
atttctttagaaacacgacaatgcgctacctggaattgtcctgattgtgcaagaatatgt
cctgacggtggaaatatcagtccgaattgtgaaatttgtgaatgtgtttcatcaaccatc
attggaacggtgaatgaccgaacaaacttttcagtagccgaagttgacatatttctctct
tatcgcccatggagtcctattgccactacaaatgttcgtggacgctatactgtatcaaac
atatgtttcaattccacttctgtgtttgtaaagaaaggaggtttttcgacacagaatgtc
acacctcggagattgaataatacgcactgggaagctaattttgaaatacgaaaactagaa
aaaccatggatttccagaaaaccggtctcaaaaatccgatttgtaggactgtcagcaacg
ttttgttgccaagcgaacggatttcccatgccacaagattttcaatggtttaaagacgac
agcatattagccggaagaggaacagatggcaatttgttattcaactcagttaaaaaatcg
gacattggaacatacttttgtaaagttacaacagaggccggatctgtttcgtcagaacgt
gtcactttagacgttagagatgcttctgttgatacctgtaatccggaaccgacaacgaaa
gaggaaaatctaccaaatggatgtttttacaatgataacggagacaggaaatcagtaata
gatgttggacattgtccaaatactaaatgcatcaccaatactctaattgacaacgggaca
tgtgaagattggtggccgaaccattgctgtgacgtatcgcaaatgcaatctatcgaagta
gaatgtgatggcgggtttacatatttgattacaaaagttgtctcctgcaaatgtcgcgaa
aatgaaatgtcaacaattataaatggaatggcgtatggtatccgcaacagctctagagta
cccttcaacagaggtgaggtaatggtagatggagagctaaagggtattacttcagccaca
gggtatttttcggtcacaatatcgggggaagtttcacgtgtggttttgaatttgcgtaat
gatagatctggtcaactcttggatacaactagagtgatagatgttgcatttggtacaacg
acttctattgatattcatgttcctttaaaacccgaaccaaaaacatttaacacacgcctt
ggctttgatatacctcttggaacggagaaaggacaaccatcaacgacaagtctatcaatt
gccgaggacagtattattgatggtgacggtaatgcttttgagggaactgcaaatgctaga
gtccattttgttgatacccgaaatttggatgacctaaatgaaatgtatggggaactgaga
tttacagacgaggaaggaaatgctgtcgacttagaaacatttggtatggttcagttatcc
gtggaagacaccactggttcacctttatatgtaaatggaaaaatcaaaatgtcgctagat
ccgacatccttcaatttgtcaaacacaggagaaaatttgcatttatatagtttggacata
aacacgggaaagtgggttgataggggtttaatgtcctataattcctcgagtggatcaagt
cggaagagaagatccagtggtgggaatattgagggggttattgctgattctattccgatt
atagatcaaacagaaatcgtgaataatatagtacaggtaagaaacacgagacttgtaagc
tccattaacatcaacacagataggcctctgatttatcgtcgcattacggaataccgtaat
gtcatttctcgcgacacagtcacaagagatgatgcatgctttgtaagagtgaaagcatac
tctgactttacatttcgcaacccagaatatggtgtccgaattaccgcagcaacgaaaacg
aaaaatggcggcccgttcagaggcagaatgtcattggtaaccagtgcaaacaataacggg
attttgtgtttgccaatcttttgcaactctgaagtttaccttatggctgagaaagggaga
acctattatgctggtgatcgtcatattttacctccacaagcagtgtcagtcaacattgca
aatggaacacagataagactggattctgattataacaattacctcaatggagaaggacct
gtttttgtctaccaaagacgatcgaaatgcatcgcagagtctacatttatttttcaattt
gcaccactattgaaggagggcatccgtgattcactgtcaggggattctatccataatcaa
ttaaattcatggtacacggaacctgcaaatagtccctttagacgaacgtgctttatgaaa
gtgaaagtagattcgatagatcattcactggaggcaactggtgttagtatgatggatcat
accagcaacatatacgtcggacgtttcaaagcaccattaatttgggacgaaactacaaac
aacagaagggaaaaggcggcctgtgtcgagtttcgttgtcctggcagacttattgatgga
accactacaattaatgatgtagcaactttgttaagagtgcagattttaagccaggaagga
cacttctgcaatatcacaaacgtggctgctggtctaaatatcgtacgtttcccgggtcca
cttggtgaaggatttcaatttcgagcggatccaaacgacaattatggatctgggatgggt
gtatacatccggacatttcctttttatgcagctgaagcgacctgtcggactggtttagat
tcaccaaacctcagccctattatgaaaccgaacgtaaaccctgcagtggaatttcagtgc
ataggaatctga
DBGET
integrated database retrieval system
