Ostrea edulis (European flat oyster): 130050796
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Entry
130050796 CDS
T09123
Name
(RefSeq) uncharacterized protein LOC130050796
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130050796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130050796
03400 DNA repair and recombination proteins [BR:
oed03400
]
130050796
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130050796
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130050796
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130050796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
AAA_lid_9
ResIII
Motif
Other DBs
NCBI-GeneID:
130050796
NCBI-ProteinID:
XP_056007407
LinkDB
All DBs
Position
10:complement(43834971..43837328)
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AA seq
411 aa
AA seq
DB search
MAVQLKELNMCKAIKYGHFSYIFIYSHPENILGKPSVNKFFQCKCFEENRIVIVIDEAHC
ILEWGDEFRPEYSKLVELRAVLPQATILCLSATLSVKGQADIKRCLSLKDCRIHSGIPVK
PNISISVLRRPASSTAVTLSYRHILDVLFNELKVKLNATPLTIVYFNSSLNHIGFAYEHA
SRVLGNFLYDGEKTPENARVVMYHASVEYESEELRELIFHQISSEDSPLRIILASSALGM
GADFGIVERIVHAGPPKSIEAYIQQVGRTGRTGKQATAILFFNNSDVGRPEMNKIMKSFC
RNEATCRRKILNDYFGFTDDTNDSENKQSLCCNICDPSLMEWNLVLPLRQEVKSSIRQSL
SDYISFHNLEISPYQIEAAIHNYSRYMETDNLIQDFGLNHEHAKIYVPFSN
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggctgtacaactcaaagagttgaatatgtgcaaagcaattaaatatgggcatttttct
tatatctttatctacagccaccctgagaacatactaggtaaaccatcagtgaacaaattt
tttcagtgcaaatgttttgaagagaacagaattgtgatagtcattgatgaggcccattgt
attttggaatggggggacgagtttcgtcctgaatatagtaagctagttgaacttcgagct
gtgcttcctcaggcgactattctttgtctttcggcaacactttccgtcaaaggtcaagct
gatattaaaagatgtttatctctgaaggattgtaggattcatagtggaattccagtaaag
cctaatatttcaattagtgttttaagaagacctgctagttctacagctgtgacactgtcg
tacagacacattctggatgtcttgttcaatgaattaaaagttaaattaaatgcaactcca
ctcactatagtgtatttcaattcatcattgaaccatattggatttgcctatgagcatgct
tctcgagtcttggggaactttttatacgatggggagaagacaccagaaaatgccagagtt
gtcatgtaccatgcatctgtggaatatgagagtgaagaactacgagaattgatatttcat
cagatttcctcagaagacagccccctaaggatcatattggcttcttctgccctcgggatg
ggagcagattttggtatcgtagaaagaattgtgcatgcaggcccacctaaaagtattgaa
gcatatattcagcaagtgggaagaacaggtagaacaggaaaacaggcaacagccattttg
tttttcaacaatagtgatgtaggcaggcctgaaatgaacaagataatgaagtctttctgc
cgtaatgaagcaacttgtaggagaaaaatcctgaatgattactttggattcacagatgac
accaatgatagtgaaaacaaacaatctttgtgctgtaacatttgtgatccaagcttaatg
gaatggaatttagttctacctcttcggcaagaggtgaagtcttccatccgacaatcattg
tcagattacatttcatttcataacttggaaatatctccttaccaaatagaagcagccatc
cacaattattcaagatatatggaaacagacaatttaattcaggattttggtttgaatcat
gaacacgcaaaaatttatgtaccattttcaaattaa
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