Ostrea edulis (European flat oyster): 130051805
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Entry
130051805 CDS
T09123
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC130051805
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130051805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130051805
03400 DNA repair and recombination proteins [BR:
oed03400
]
130051805
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130051805
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130051805
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130051805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130051805
NCBI-ProteinID:
XP_056010470
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All DBs
Position
1:complement(55640686..55643645)
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AA seq
445 aa
AA seq
DB search
MEEKALSSVLEKFKFDIKLKEEQQNIIFSILRKMDVFALLPTGFGKSMTYILVPLLADEL
KGGAPSHTALVVSPLKALMKDQVEFLGQHNVSAVALMDDTKSQDVVNKHYSVIYASPEAA
IHQRWRKVLRDWLKPKVCVLVFDEAHCISSWGLEFRPAYRQVSGLQSIINTCTLALSATA
TRKIQEDIYETLGFQTETTKVVAVLPDRPNIFLNVKNSTEKFEEELAWIVTHIKSNQRQR
KILLYVRSINICYNIYLWLLSSIEDXFFVHNTPSLENRRIEMFHANTXESKERILTEYIK
PSGNIQVLISTVAFGMGINIPDVDIIVHWGLPTSCLSYWQEIGRCARDGRVGHAICYGFK
RSVSKCEEEMKNLIKLESCARVSVLKNFHLRGMQTRDIDNLKRNIICNNDCEGNCTCKKC
KCCSVCSSLCSCPQHTKDHLQSFLT
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaagcgctttcgtcagtgttggagaagtttaaatttgatattaagttaaaa
gaagaacagcagaatattatatttagtattttaaggaagatggacgtttttgctttatta
ccaactggatttggcaagtccatgacgtatattttggtgcctttgcttgcagacgagtta
aagggaggtgcaccaagccatacagcgttagttgtatctccactgaaagcgttaatgaag
gaccaggttgaatttctcggccagcacaacgttagcgcagttgcgttgatggacgacaca
aaaagtcaagatgttgtgaacaagcattacagcgttatatatgcatcaccagaggcagct
atacaccaacgatggcgaaaagtattgagggattggctgaaaccaaaagtgtgtgttcta
gtgtttgatgaagcacactgtatttcatcatggggactggagttcagaccagcctatcga
caggtgtcgggattacagagcataatcaacacttgtaccttagcattatcagcaacagcc
acaagaaagattcaggaggatatttatgagactcttggctttcaaacggaaacaacaaaa
gttgttgcagtcctgccagataggccaaatattttcttaaatgtgaagaattcaacagaa
aaatttgaagaagaactagcatggattgtgacacatatcaagagcaaccagaggcagagg
aagatattactgtatgtcaggtccatcaacatttgctacaacatttatctgtggttgcta
tcttctattgaagacnaattttttgtgcacaacacaccatcgttagaaaatagaaggatt
gaaatgtttcatgcaaatacancagaaagcaaggaaagaattttgactgaatatattaag
ccatcaggaaatattcaagtgttgatttcgacagttgcatttggaatgggcatcaacatt
ccagatgttgacattattgtgcattgggggcttccaacttcgtgtctaagttactggcaa
gaaattgggagatgtgccagggatgggagagttggacatgcaatatgttatggattcaaa
agaagtgtttccaaatgtgaagaggagatgaaaaacctaataaaacttgaatcatgtgct
cgtgtatcagttcttaagaatttccatctacgtggaatgcagacaagggatatagacaat
ctaaaacggaacataatttgcaataatgactgtgagggaaattgcacatgcaaaaaatgc
aaatgttgtagtgtgtgtagcagcctttgtagctgtccccaacacacaaaagatcatctg
caatcattcctgacctag
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