Ostrea edulis (European flat oyster): 130052016
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Entry
130052016 CDS
T09123
Name
(RefSeq) ATP-dependent DNA helicase RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130052016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130052016
03400 DNA repair and recombination proteins [BR:
oed03400
]
130052016
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130052016
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130052016
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130052016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
DUF4909
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
130052016
NCBI-ProteinID:
XP_056011704
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All DBs
Position
2:99703576..99705875
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AA seq
473 aa
AA seq
DB search
MKGKMADIKVIDAALEKILPRFGVSALKKEQRSILDAMVEGKDCMAILPTGFGKSLPFQV
YIPLMREMNPGFSAVILVCCPLVALMQDQVKKISAVPGISAAYKGLSEESDRQILSGEID
VIYASPESLISNAVWREDMKKLNVQNIVIDEFHTIATWGEDRMGLKKQAFRKWFSHVGEL
RSLFPKASVIALSATSTVKIQKRVSKQLSFGPNTVEIVMSPNKANIKYSISKVSSDLEMA
MSWLVDGIQHLQSDFPKTLLYCSSINDVSKLYTYLIKELDGTSPLIEMFHSETPIGKKTE
IVNCLNDQNNTSKIRLVICTTALGMGIDVSHCNSVILFGIPENIVDLVQEIGRIGRDGES
SIALILFNAYHLRRLDKSMKDILRSPTCRRINIMKQFLSESNLSELEQDVKKHTCCDVCH
KLCSCGNCEYLSLERLFEQSVISNSDSNEAEDSFGSSDNDFLDGTLDLNSCYV
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaaaaatggccgacattaaagtaatcgatgcagctttagagaaaattttacca
cgtttcggtgttagtgctttaaagaaagaacaacggagcatattggatgccatggttgaa
ggcaaagactgtatggccattttgccaactggttttggcaaatcgctgccttttcaagtc
tacattccacttatgcgcgagatgaaccccggatttagtgctgtgatattagtctgctgt
cctttagttgcactaatgcaggaccaggtgaagaaaatatcagctgtgccgggtatatcg
gcagcgtacaaaggtttaagtgaagaaagtgacaggcagatactcagtggggaaatagat
gtcatctatgcatctccagaatctttgataagtaatgcagtttggagagaagatatgaag
aaattgaatgtacaaaacatagtcattgatgaatttcatacgattgcaacatggggtgaa
gaccgaatgggtttaaagaaacaagcatttaggaagtggttttcgcatgtgggagaatta
agatctttatttccaaaagccagtgttatcgcactaagtgcaacatctacagtaaaaatt
cagaaaagagtttcaaaacagttgtcttttggaccaaacacagtagaaattgttatgtct
ccaaataaagctaacataaaatactcaatatccaaagtatccagtgatcttgaaatggca
atgtcctggcttgtggatggaattcaacatttgcagagtgactttcccaaaacattattg
tactgttctagcattaatgatgtttctaaactttacacttatctcattaaggagttggat
ggcacaagtcctcttattgaaatgtttcactcagaaacacccattggcaaaaaaactgaa
attgtcaattgcttaaatgaccagaataacacttcaaaaatcagattagtgatttgtact
actgcattagggatgggtattgatgtgtcccattgcaacagtgtaattctgtttggaata
cccgaaaatattgtagacttagtgcaagaaatagggcgcattggaagagatggggagtca
tcaattgcccttattttgtttaacgcttatcatctgcgtagacttgacaaatccatgaaa
gatatcctacgttcacctacttgtagacgaataaacattatgaaacaatttttgagtgaa
tccaatttaagtgaacttgaacaggacgttaaaaagcatacatgctgcgatgtgtgccac
aaactttgtagttgtggcaattgtgaatatctttccttggagagactttttgaacagagt
gtcatttccaactcagacagtaatgaggctgaagattcttttggaagttcagataatgac
ttcttagatggcacactcgacttaaattcatgttatgtctga
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