Ostrea edulis (European flat oyster): 130052487
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Entry
130052487 CDS
T09123
Name
(RefSeq) uncharacterized protein LOC130052487
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130052487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130052487
03400 DNA repair and recombination proteins [BR:
oed03400
]
130052487
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130052487
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130052487
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130052487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
AAA_14
Motif
Other DBs
NCBI-GeneID:
130052487
NCBI-ProteinID:
XP_056013608
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All DBs
Position
3:complement(23814409..23818060)
Genome browser
AA seq
504 aa
AA seq
DB search
MASPMEININAALLSYNSKLGVEISSLKPAQSNALEAILRGHDVIAAFPTGFGKSLIYEI
IPFVNPNACVLVIEPLNVIIQQQLKKLCGLAIFLQKHMNVEDLDKVKKGKFPFIYCHPEF
LIGNPEINKLLQGDFFQNDDTVIVIDEAHCVMEWGEEFRTDYKRLSELRAVISKAKILAL
SATLSKSSQLELIKNLKMKDSKVFVEKPMPDNIDICVEERPPYSFAAKESYRFVFEAIFN
EVKTKLNECPLTIVYCSGSMHWIGYGYELAHSILREDIKADNGDPRVIMYHSSVEQDSGE
LKDRIHQLLSSESSALRVVIASSALGMGADLRYVKRVVHAGPPKSIEAYVQQIGRAGRTG
EEAHAVLFYNKSDIGRKEMRSEMREFCKNKDICRRKMLINYFGYSSDTLHKTTKCCNICT
PDLKALCVIPPVNVEKRESLRVAITELMKSKDPNLVNSMKLEVECIVFNHSIYLDYKNLE
KDFNIDLHLAKDIALIIKQIMSFN
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcctatggagatcaacattaacgctgctctattaagctataacagcaaactt
ggtgtggaaatttcatcattaaagccagcccagtcaaatgcccttgaagctattctcaga
ggccatgatgttatagctgcatttcctacaggatttggaaagagtctcatttatgaaata
ataccttttgtcaatcccaatgcatgtgtattagttattgaacccttgaatgtgataatt
cagcaacaactgaaaaagctctgtggtctggcaatttttcttcaaaaacacatgaatgtg
gaggacttagacaaagtgaaaaagggcaaatttcctttcatttactgtcatcctgaattt
ctgataggaaatccagaaataaacaagcttcttcagggtgatttttttcaaaatgatgac
actgtcattgttattgatgaagctcactgtgttatggaatggggagaggagttccgaact
gactacaaaagattgagtgaacttcgtgctgtgattagcaaagcgaaaatacttgcattg
tctgcaacgttgtcaaaaagcagtcagctggaattgattaaaaacttaaaaatgaaagac
agtaaagtgtttgttgaaaaaccaatgccagacaatattgatatttgtgtagaggaaagg
ccaccatattcttttgctgccaaagaatcatacagatttgtatttgaggcaatttttaat
gaggtgaagacaaagctaaatgaatgtcctttaactattgtttactgcagtggttcaatg
cattggattggatatggatatgagttggcacacagcatcttgagggaagatattaaagca
gacaatggtgacccacgtgtcattatgtaccattcttctgttgaacaggacagtggagag
ttgaaagacagaattcatcaattactgtcatcagaaagcagtgcactacgagttgttata
gcatcatcagcattgggtatgggtgctgacctaagatatgtaaagagggtggtacatgca
ggacccccaaaaagtatcgaagcttacgttcagcaaataggacgagctggcagaacagga
gaagaagcgcatgctgtgcttttttacaataaaagtgacattggaagaaaggagatgagg
tcagagatgagggaattctgcaaaaacaaagatatttgcagacgcaagatgttaatcaat
tactttggatacagttcggacacattgcataaaacaacaaagtgttgtaacatttgcaca
cctgatctgaaggcactgtgtgtaatacctcctgtaaatgtggaaaaaagggagtcactg
agagtagcaattacagaactcatgaagtcaaaggatccaaatttagtgaattctatgaag
ttagaagttgaatgcatagtattcaaccattctatatatctagactataaaaacctggag
aaagatttcaacattgaccttcacttagctaaggacattgccttaataataaaacaaatt
atgtcctttaattaa
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