Ostrea edulis (European flat oyster): 130052650
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Entry
130052650 CDS
T09123
Name
(RefSeq) recQ-like DNA helicase BLM
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130052650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130052650
03400 DNA repair and recombination proteins [BR:
oed03400
]
130052650
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130052650
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130052650
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130052650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130052650
NCBI-ProteinID:
XP_056014203
LinkDB
All DBs
Position
3:complement(56866611..56869826)
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AA seq
541 aa
AA seq
DB search
MASSSKSEEMLNDESKKKISDVFKVDLRENQVRGIEAVMAGKDVFVGTRTGSGKSLVYES
IPIIKPGIIVIVAPLLSIMKEQVEKLSSLGFKATHIGKDDAENEGIEKGKYSFLFGSPEK
LVGETKWREMLQSNVYKSKLQLLVVDEAHTVTLWGFGREGEEPFREWFSKIGELRSLFPN
IPVVALTATSSTSQRKKIMNSLCFDKHAIIISESPNRENIKMTSIQVPNNENLQITFSWM
IQGLQEKKEKFPRHLVFCETILTVSKLYSVFMDTFGRNCPYYNMFHSKTKETVKDEIRKD
MAKDGVIRVLICTNFAGMGVNYSFLSNVIHYELPHEMDTFVQQMGRAGRDGHFSHELILF
KVHKGMLKKIDPELVQLAKDSQCRRKIFCNSYACSFQEVVPIHKCCNICEKNCSCGEETC
PEAHPATKSTSQCSCLSPNLLERSVTHGDRMFLREKLIAYKFSLCDSTNLISNNLLHGLT
DKLIEDIVGKSNVLFTAADIINSFPIWDYEVAEKICSIINEVFGDTEMYNISDSDASDLE
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatccagtaaaagcgaggaaatgctgaacgatgaatcgaaaaagaaaatttcg
gacgtattcaaagtagatttaagggaaaaccaggtgagaggaattgaagcagttatggct
ggcaaagatgtatttgttgggacacgaacaggtagcggaaagtccttggtatatgaaagc
atccccatcatcaaaccaggaataattgtaattgtggcacctctcctatcaattatgaaa
gagcaagtggagaagttgagcagtttaggctttaaagccactcatatagggaaagatgat
gcagagaacgaggggatagagaagggaaagtacagtttcttgtttggaagcccagagaaa
cttgttggagagactaagtggagagaaatgctgcagtctaatgtatataagagcaaactg
caattgttagtggtggatgaggcccatacagttacactttggggattcggcagggaaggt
gaagaaccattccgagagtggttttcaaaaataggagagttaagatcccttttcccaaat
atcccagttgtggcactaactgcaacatcatcaacatcccaaaggaagaagattatgaat
agcctctgttttgataaacatgctatcataatttcggaatctccaaacagagaaaacatt
aaaatgacatcaatccaagtacccaacaatgagaatttacaaatcacatttagttggatg
atccaaggattgcaagagaaaaaagagaaatttccaagacatttggtattttgtgaaacc
attttgacagtttcaaaactttattctgttttcatggatacttttgggagaaactgtcca
tattataatatgttccacagtaagaccaaagagactgtaaaggacgaaatccggaaagac
atggctaaagatggagttattcgtgttttaatttgtacaaactttgcaggaatgggagtg
aattactcatttttaagtaatgtgatacattatgaactcccccatgaaatggacactttt
gtccagcaaatgggtcgagcaggacgggatggtcacttttctcatgaacttattttattc
aaagtgcataaaggaatgttgaagaaaattgacccagaactagttcaattagcaaaggac
tcgcagtgtcgacgtaaaattttttgtaactcttatgcatgttcatttcaagaagttgtt
ccaatccacaaatgttgtaatatctgtgagaaaaattgtagttgtggtgaggaaacatgc
ccagaagcacacccagcaacaaaatcgacaagtcaatgctcctgccttagtcctaacctt
ttagaacgatcagtgacacatggagaccgtatgtttttaagagaaaaacttattgcatat
aaattctcactatgtgattccacaaatctgatatctaataatcttctgcatggattgaca
gataaacttattgaagacattgtggggaaatcgaatgtgcttttcactgcagctgatatc
attaatagttttccaatctgggattatgaagttgcagaaaaaatttgctccattatcaat
gaggtttttggggatacggaaatgtacaatatcagcgatagtgatgcatcagatttagaa
tcttga
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