Ostrea edulis (European flat oyster): 130053468
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Entry
130053468 CDS
T09123
Name
(RefSeq) ATP-dependent helicase wrn-1-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130053468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
130053468
03400 DNA repair and recombination proteins [BR:
oed03400
]
130053468
Enzymes [BR:
oed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130053468
Messenger RNA biogenesis [BR:
oed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
130053468
DNA repair and recombination proteins [BR:
oed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
130053468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
PhoH
AAA_22
DUF5639
AAA_30
RHH_8
Motif
Other DBs
NCBI-GeneID:
130053468
NCBI-ProteinID:
XP_056016750
LinkDB
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Position
3:complement(15813531..15815410)
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AA seq
388 aa
AA seq
DB search
MADLQRLEREICEKFNISALTDNQRTAISSLSEKRDIFIGTKTGSGKTLTYECVLLVFGE
TAVTVIVAPLVSIMKEQVERLSSLGYRAVDLEGSTDVENVMNGYYNFIFGSPEVLVGETK
WRDVLKNPEFTKRHRLIVVDEAHTIIHWGEEKNKQETAFRELFGHIGELRSLCLKVPVLA
LTSTACPSHKRKIMSKLCYGKNACVISDTPDRKNIKMSVVKVKQSDDLDVIFSWIIEGLS
KEQNKFHKHLIFWNSIKDCSLIYMIFVKHFGKSNLFIMFHSKTTDYVKDKIRNDMSNPSG
QLRVLICTNAAGMGVNYSELYNVIHYGPPKEIDSFVQQMGRAGRDNTQSHDLIIFKSAQL
KRVDNDMKDLVVSDSCRGLLLTKSYMCD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggccgatctacagcgtctagagagagaaatttgcgaaaaattcaacatcagtgccctc
actgataatcagcgaactgcaatatccagtttatcagaaaaacgtgatatattcatagga
actaagacaggaagtggcaaaacactcacttatgagtgtgtactacttgtgtttggtgaa
acggcggtaaccgttatagtcgctccattggtgagcattatgaaggagcaagtagaacga
ctttccagcttgggatatagggcagtagatctagaagggtcaaccgatgtcgaaaacgtt
atgaacgggtactacaacttcatttttggtagccctgaagtactggtgggtgagacaaag
tggagggatgttctcaaaaaccccgagtttaccaagagacaccgtttgattgttgtagat
gaagctcataccatcattcattggggagaagaaaagaataaacaagaaactgcattccgt
gaattgtttggtcacattggtgaactgcgttctctatgtttaaaagtccctgttttggcc
ttgacttcaactgcatgtccaagtcacaaaagaaaaatcatgtcaaaattgtgctatgga
aaaaacgcttgtgtaatatcagacactccagatagaaagaacattaaaatgagtgttgtg
aaagtgaaacaaagtgatgaccttgatgtcattttctcatggattattgaggggctttcg
aaagaacaaaacaagtttcataaacatttgatattttggaactcaattaaagactgttca
ttaatatatatgatttttgttaaacatttcgggaaaagcaatcttttcatcatgtttcat
agtaaaacaacagattatgtgaaggataaaattagaaatgatatgagtaatccaagtgga
cagctaagagtactaatttgtacaaatgctgcaggcatgggggtgaactactccgagtta
tataatgtgattcattatggacctccaaaagaaattgactcttttgttcagcaaatgggc
cgtgcaggcagagacaacacgcagtctcatgacctcattatctttaaatctgcacaactg
aaaagagtggataatgacatgaaagaccttgttgtatctgacagttgcaggggattgcta
ttaaccaagtcatacatgtgtgattag
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