KEGG   Ostrea edulis (European flat oyster): 130054034
Entry
130054034         CDS       T09123                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
oed  Ostrea edulis (European flat oyster)
Pathway
oed03030  DNA replication
oed03410  Base excision repair
oed03420  Nucleotide excision repair
oed03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oed00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    130054034
   03410 Base excision repair
    130054034
   03420 Nucleotide excision repair
    130054034
   03430 Mismatch repair
    130054034
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oed03032]
    130054034
   03400 DNA repair and recombination proteins [BR:oed03400]
    130054034
Enzymes [BR:oed01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     130054034
    6.5.1.6  DNA ligase (ATP or NAD+)
     130054034
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     130054034
DNA replication proteins [BR:oed03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    130054034
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     130054034
DNA repair and recombination proteins [BR:oed03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     130054034
   NER (nucleotide excision repair)
    Other NER factors
     130054034
   MMR (mismatch excision repair)
    Other MMR factors
     130054034
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 130054034
NCBI-ProteinID: XP_056018191
LinkDB
Position
4:21546587..21566734
AA seq 559 aa
MITGRGIDKVKADAQEKGDLGLVAETSRSSQRTMFTPAKLTVPAVFSKLRDIAGMSGNSA
MAKKIEKIKGMFVACRQCEARYLIRSLGGKLRIGLAEQSVLTALGNAVFRTPPGQDFPPE
VLDAGKGLGADSLKKKMEECALIIKSTYCECPSYDAIIPALIKYGIQELPNHCKLTPGVP
LKPMLAHPTKGVSEVFKRFDEADFTCEYKYDGERAQIHILENGDVHIYSRNSENNTSKYP
DIIARIPKVKADTVTSCVIDSEAVAWDAEKKQIQPFQVLSHRKRKDADASNIKIQVCVYA
FDLLYLNGKSLVKEPFRKRRELLHSSFREVEGEFVFAKSMISSNTDEIAEFLDDSIKGNC
EGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLLVMGGFLGTGKRTGRYGGFL
LACYDEENEEFQSICKIGTGFTDASLETHASFFKDHVTEKPKPYYRYDSSVEPDHWFDAV
QVWEVKCADLSISPTHMAAAGIVDPEKGISLRFPRFLRIRDDKKPEEATSASQVAELYKN
QQQIQNQQKSEKEEVEDFY
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgatcacaggtagaggcattgacaaagtgaaagctgatgcccaggaaaaaggtgacctt
ggactggtggcagagacaagcaggagctctcagcgaacaatgttcactccagccaaactg
acagtaccagccgtgtttagtaaactgagggacatagcaggaatgtccggtaattctgct
atggcgaaaaagatagagaagattaaaggcatgtttgtggcgtgtcggcagtgtgaggct
cgctacctgattcgctccctcggaggaaaactcagaatcggtctagcagaacagagtgtg
ttaacagccctgggaaatgcagttttcaggacacctccaggtcaagattttccaccagaa
gtgttagatgctggaaaaggcctgggtgctgattcccttaaaaagaaaatggaggaatgt
gctctcataatcaaatcaacctactgtgaatgtccaagttacgacgctattataccggcc
ttgattaagtatggtatacaagagttaccaaaccactgcaaactgaccccaggtgttcct
ttgaagccaatgttagctcatcctaccaaaggagttagtgaggttttcaaacggtttgat
gaggcggactttacctgtgaatataaatatgatggagaaagagcacagatacacatcctt
gagaacggtgatgttcacatctacagcagaaactcggagaacaataccagtaaataccca
gacatcatcgctcggatcccgaaggtgaaggccgatactgtaacctcctgtgttatcgac
tcagaagctgtcgcgtgggatgcagagaaaaaacagatccaaccattccaagtcctcagc
cacaggaaacggaaggatgctgatgcctcgaatattaagatccaggtgtgtgtgtatgca
tttgaccttttgtacctcaacggaaaatctctggtgaaggagcctttcaggaagaggcga
gaacttctccactcgtcattcagggaagtcgagggagaatttgtgtttgccaaatccatg
atttcatccaacacagatgagattgccgaatttctggatgactccattaaaggaaactgt
gagggtcttatggtgaaaaccctagacgtagatgctacgtatgaaattgccaagaggtct
cacaattggttgaagttgaagaaggattacttggatggggtgggagacacattggatctg
ctcgtgatgggaggttttctggggacaggaaagagaactggacgctacggaggattcctc
ctggcctgttacgatgaggagaatgaagagttccaatccatatgcaagattgggacaggc
ttcaccgatgcatccctagagacacatgctagtttcttcaaggaccatgtgacggagaag
ccaaagccgtattaccggtatgattcctcggtggaaccggaccactggtttgatgcggtg
caggtttgggaggtgaagtgtgccgacctctccatctcgcccacacacatggctgcagct
ggaattgtggatccagagaaaggtatatccctgaggtttccccgatttttgcgaattaga
gatgacaagaaaccggaggaggcaacttcagcttcacaggtggcagaattgtataaaaat
cagcaacaaattcaaaatcaacaaaaatcagagaaagaggaagttgaggacttttattga

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