Oerskovia sp. KBS0722: FFI11_001365
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Entry
FFI11_001365 CDS
T06124
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
Organism
oek
Oerskovia sp. KBS0722
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
zf-HC2
Sigma70_r4_2
CLIPPER
PLipase_C_C
CBM_5_12
Motif
Other DBs
NCBI-ProteinID:
QDW61341
LinkDB
All DBs
Position
complement(316686..321899)
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AA seq
1737 aa
AA seq
DB search
MTQVDTSRDDAPTSDAELITAVRGGDYAAFGALYERHAAAARTVARQYVRSGSDADDMVS
EAFAKVLGILQSGGGPDVTFRAYLFTVVRRLSYDLSNAGRRTQPTDDIETFESAFGPMAS
TEDPTLQGFERSVVTKAYQGLPERWQAVLWYTEVEEMNPAQIAPLLGLTANGVSALAYRA
REGLRQAYLQQHLTGASSAGCENVNPLLGSYVRGGLAKRETAKVDAHLEECGECRALVLE
LGDVSHGMRAVIAPLVFGVAALGLVGTALPLTGGAAVGAGAAGATGAASGASGSAGSGAA
GASGSGAAGSGAAAGGSGAAAGTGAAGGAAGTGAMGGAAAAGAAATSGGLGAAAAVGASA
AVGTGAAAAAGATGLAAFIAASPLIAAAVGVVAVAAVGAGVVAVSGGFSSEPPPSAGASP
DPSASTSPSDAPTSIPTSEPSAPPSGDPTSPANTAPLTEAPADTTNPAAPASNENAAAGS
DTAPAGQGEPTTPLVPPTFPLTPVAPVVPGAPDPVVPVDPPAPASLDLAFAPLTLAPRDP
EDLTLTASNSGGTSAEEVVVDVTLPPNVSVVTSAVTAGRGVVPAIRLAALPCGPASPQSD
GSSLVTCSVGVLSPGETKDLVITVQASRGGSYTFGGTVHGKGLTPVTKEYVPAPVPSYGA
EIDLVTPTVGELVNPGATSVRLTARNTGDVDAQGVVFFVGDLPAGVTAKPLDAGWACSPG
DASLRCTLTGDAALVAPGGSQTSGPPVALDIQLLAGDGAEATTAGLSFSATTSSAGRILR
DSASAGLTVGEPWAGADKIPAGAAFAAQCVDGTATVALKGVTNTTAYDDLRVTLGVDDAT
SPTVSVPRGATTQLAVPHDLRVLKDASASLTLVTAVDGREFTRKVPVAGVPAQDCFVPQW
LSGADVTTSPGNEAGTVRLEAVVTNSTGRPMTIQVDDMTPVGAEEASRGTATIDPGTSAT
FFRSTGEQVLASGDLVVRQHLSVPDADGDPGEYDQHLTVGHAAARIAPASPTPTVGECVY
VPETRTSSAPVSLTLDNSASTLPVVFTVAGHDPVEVEPRQVATLKDAVGYQGATFVVLAD
GREVARHVVPGVSCYVPQWSQDVSVAVENVGGQVRLTGTVVNTTAEAMDVRMLAPVGLGV
KDSEKVTLAPGQTGSFTIDTGRQSVDAGKVTFRQYRWVVEAGSEGKGYTHSEQASFDAAR
IAPRAVAPTVGQCVFDLGSRTSVADVVFSFDNSASTLPVEFGVAGQDGLRTVVGAGETAT
VTAPGLLRGLDARELTVLADGRDAGAFTLRGVSCYVPQWSQDVSVAAENVGGQVRLTGTV
VNTTAEAMDVRMLAPVGLGVKDSEKVTLAPGQTGSFTIDTGRQSVDAGKVTFRQYRWVAE
TGAPGKGYQGEVVATYDRATIAPKAAVTAGQCAYDPAAHTSSTSVTLTFDNSSSTLPVQF
TVAGRDDLAQVVAPGKVVPVTASAGYQGATFTVSADGRQVASQVIPAASCYVPSWSATQT
ARAEAGDKSVRIVGTYTNTSPGTVRVRMYSPVYGFAGAAVDVPAGATQEFTLSTGVTRLP
AGTVQFQQSVTADGVARSNTVTARYEAGRYDVFAPTVAPPILGVCFFEDNEQQSYRPVTF
VYDNMSSTAAVTFHVEVNGVVAPETHRVVQDQKRVQLKVPNVPERGATYRVVADSGHSWT
FEVAGQTCLPTWHWTEAYRVGDRVAYEGRNYTATAWSVSVVPGSAFGAYFWRDESRG
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaggtcgacacgtcgagggacgacgccccgacgagcgatgccgagctcatcacc
gccgtccgcggaggtgactacgcggcgttcggtgcgctgtacgagcggcacgcggcagca
gcacgcaccgtcgcgcgccagtacgtgcgctcgggatccgacgccgacgacatggtctcg
gaggcgttcgccaaggtcctcggcatcctgcagtcggggggcgggcccgacgtcacgttc
cgtgcctacctcttcaccgtcgtccggcgtctgtcctacgacctgtcgaacgcgggccga
cgcacgcaacccaccgacgacatcgagacgttcgagagcgcgttcgggcccatggcctcg
accgaggaccccacgctccaggggttcgagcgctccgtcgtgaccaaggcgtaccaggga
ctgccggagcgttggcaggccgtgctctggtacaccgaggtcgaggagatgaacccggcc
cagatcgcgccgctgctcggtctcacggcgaacggcgtctcggcgctcgcctaccgcgcc
cgggaagggctgcgccaggcgtacctccagcagcatttgacgggtgcgagcagcgcaggg
tgcgagaacgtcaaccccctgctcggctcctacgtccgtggtgggctcgcgaagcgtgag
accgccaaggtcgacgcgcacctcgaggagtgcggcgagtgccgggcgctcgtgctcgag
ctcggcgacgtctcgcacggcatgcgcgccgtcatcgccccgctggtcttcggggtcgct
gcgctgggtcttgtcgggacggctctcccgctcacgggtggtgcagccgtgggtgccggt
gccgctggtgcgacaggggccgcgagcggtgcgagcggcagcgcggggagtggtgcagcc
ggggcctccggttcgggtgccgccggttccggagccgccgcaggtggcagcggggctgct
gccgggaccggtgccgccggaggggccgcggggacgggagccatgggaggcgctgcggcg
gccggtgcggctgccacgagcggtgggctcggcgcggcggcggctgtcggcgcgagcgcc
gcggtcggcaccggcgccgctgctgcggccggcgcgaccggcctggcggccttcatcgcc
gcgtcccctctgatcgccgccgcagtgggcgtggtggcggtcgcagccgtcggtgcgggc
gtcgtcgccgtgtccggtgggttctcgtccgaaccgcctccgagcgcgggcgccagcccc
gacccgtcggcctcgacgtcgccgtcggacgctcccacgagcattccgacgagcgagccg
tcggctcctccgagcggggatcccacctccccggcgaacaccgcgccgctcaccgaggcg
cccgccgacaccacgaaccccgcggcgccggcctcgaacgaaaacgcggccgcggggtcc
gacacggccccggccgggcagggcgagccgacgacgcccctcgtgccgccgacgttcccg
ctgacccctgtggcccccgtcgtccctggtgcaccggacccggtcgtccccgtggacccg
ccggccccggcgtccctcgacctcgcgttcgcccccctcacgctcgctccccgcgacccc
gaggacctgacgctcacggcgtccaactccggcggcacgtccgccgaggaggtcgtcgtc
gacgtgaccctcccgccgaacgtctcggtcgtgacctccgcggtcaccgcgggccggggt
gtcgtcccggcgatccggctcgcggcgctgccgtgcggcccggcatcgccgcagagcgac
gggtcgtcgctcgtcacgtgctcggtcggggtgctctctcccggggagacgaaggacctc
gtcatcaccgtccaggcctcgcgcggggggagctacacgttcggcggcacggtgcacggc
aagggcctgacccccgtgacgaaggagtacgtgccggcgcccgtgccgtcgtacggcgcc
gagatcgacctggtgacgccgaccgtcggcgagctcgtcaaccctggcgcgacctcggtc
cggctcacggctcgcaacacgggggacgtcgacgcccagggcgtggtgttcttcgtgggc
gacctgcccgccggcgtcaccgcgaagccgctggacgccgggtgggcctgttcgccggga
gacgcctccctgaggtgcacgctgacgggcgacgcggcgctcgtggctcccggcgggagc
cagacctcgggtccgccggttgcactcgacatccagctcctcgcgggagacggggccgag
gcgaccacggccgggctctcgttctccgcgaccacgtcctctgccggccggatcctgagg
gactccgcgagcgcgggcctgacggtcggcgagccctgggccggcgcggacaagatcccc
gccggggccgcgttcgccgctcagtgcgtcgacggcaccgcgacggtcgcgctgaagggc
gtcaccaacacgacggcctacgacgacctccgggtgaccctcggcgtcgacgacgcgacc
tctccgacggtgtccgtgcctcgcggggccaccacgcagctcgcggtgccccatgacctg
cgcgtcctgaaggacgcctcggcgtccctgacgctggtgaccgcggtcgacggacgtgag
ttcacacggaaggtcccggtggccggcgtcccggcccaggactgcttcgtcccgcagtgg
ctgtcgggcgccgacgtgaccacgagccccggcaacgaggccgggacggtccgtctcgag
gcggtcgtcaccaactcgaccgggcgtccgatgacgatccaggtcgacgacatgacgccg
gtgggcgccgaggaagcctcgcgagggaccgccacgatcgacccgggcacgagcgcgacg
ttcttccggtcgaccggcgagcaggtcctcgcgtccggagacctggtcgtgcgccagcac
ctgtcggtccccgacgccgacggtgacccgggcgagtacgaccagcacctcactgtcggc
cacgcggcggcaaggatcgcgcctgcgagcccgacgccgacggtgggtgagtgcgtctac
gttcccgagacgcgcacgtcgtcggctcctgtgagcctgacgctcgacaactcggcgtcg
acgctgccggtggtgttcacggttgccgggcacgacccggtcgaggtggagccccgccag
gtcgcgacgctgaaggacgcggtcgggtatcagggtgcgacgttcgtggtgctggctgac
gggcgtgaggtcgcccgacacgtggttcctggtgtgagctgttacgtgccgcagtggtcg
caggacgtgtcggtcgctgtggagaacgtgggtggtcaggtgcgtctgaccggcacggtc
gtgaacacgacggccgaggcgatggacgtgcggatgctcgcgccggtgggcctcggtgtg
aaggactcggagaaggtcacgctggcgccgggacagacgggctcgttcacgatcgacacg
ggtcgccagtcggtcgacgccgggaaggtcaccttccgccagtaccggtgggtggtcgag
gccgggtcggagggcaagggctacacgcactctgagcaggcgtcgttcgacgcggcacgg
atcgcgccccgggccgtggcgcccacggtggggcagtgcgtcttcgacctcgggtcgcgg
acctcggtcgccgacgtcgtgttctcgttcgacaactcggcctcgacgctgccggtcgag
ttcggcgtggccggtcaggacggtctgcgcacggtcgtcggcgcgggtgagacggcgacg
gtgaccgcaccgggtctgctgcgcgggctcgacgcgcgcgagctcacggtcctggcggac
ggtcgggacgccggggcgttcaccctccgtggtgtgagctgttacgtgccgcagtggtcg
caggacgtgtcggtcgctgcggagaacgtgggtggtcaggtgcgtctgaccggcacggtc
gtgaacacgacggccgaggcgatggacgtgcggatgcttgcgccggtgggcctcggtgtg
aaggactcggagaaggtcacgctggcgccgggacagacgggctcgttcacgatcgacacg
ggtcgccagtcggtcgacgccgggaaggtcaccttccgccagtaccggtgggtcgcggag
accggcgccccgggcaaggggtaccagggtgaggtcgtcgccacgtacgaccgcgcgacg
atcgccccgaaggccgccgtcacggccggtcagtgcgcctacgacccggccgcgcacacc
tcctcgacctccgtgacgctcacgttcgacaactcgtcctcgacgttgccggtgcagttc
acggtcgcgggtcgcgacgacctcgcacaggtcgtcgctccggggaaggtcgtcccggtc
acggcgtcggccgggtaccagggcgccacgttcacggtatcggccgacggacggcaggtc
gcgagccaggtgatccctgccgcgagctgctacgtcccgagctggtcggcgacccagacg
gcccgcgcggaggcgggcgacaagtcggtccgcatcgtcggcacgtacaccaacacctca
ccgggcacggtgcgagtgcgcatgtactccccggtgtacggattcgccggggcggcggtc
gacgtcccggcaggggccacccaggagttcaccctgtcgacgggggtcacccggctcccc
gccgggaccgtccagttccagcagtcggtcaccgcggacggtgtggcgcgcagcaacacc
gtgaccgccaggtacgaggccggacgctacgacgtcttcgcgccgacggtggcccccccg
atcctgggcgtctgcttcttcgaggacaacgagcagcagtcgtaccggccggtgacgttc
gtgtacgacaacatgtcctcgaccgcggccgtcacgttccacgtcgaggtgaacggcgtg
gtggcgcccgagacgcaccgggtggtgcaggaccagaagcgggtccagctcaaggtgccg
aacgtgcccgagcgcggcgcgacgtaccgcgtcgtggccgactccggccattcgtggacg
ttcgaggtcgcggggcagacctgcctgccgacctggcactggaccgaggcctaccgggtg
ggcgaccgcgtcgcgtacgagggccggaactacaccgcgacggcgtggagcgtctcggtc
gtgccgggctccgcgttcggcgcctacttctggcgcgacgagagccgcggctga
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