Oerskovia sp. KBS0722: FFI11_006920
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Entry
FFI11_006920 CDS
T06124
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
oek
Oerskovia sp. KBS0722
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oek03032
]
FFI11_006920 (topA)
03400 DNA repair and recombination proteins [BR:
oek03400
]
FFI11_006920 (topA)
Enzymes [BR:
oek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FFI11_006920 (topA)
DNA replication proteins [BR:
oek03032
]
Prokaryotic type
DNA Topoisomerases
FFI11_006920 (topA)
DNA repair and recombination proteins [BR:
oek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FFI11_006920 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QDW62300
LinkDB
All DBs
Position
1542575..1545412
Genome browser
AA seq
945 aa
AA seq
DB search
MSSGRKLVIVESPTKARKIQGYLGDDFEVESSVGHIRDLPQPSELPADMKKGPFGKFAVN
VDEGFEPYYEVYADKKKKVAELKRALKNADELYLATDEDREGEAIAWHLLEELKPKVPVH
RMVFHEITREAIERALENTRDLDEHLVDAQETRRILDRLYGYEVSPVLWRKVRQGLSAGR
VQSVATRLVVERERERMAFVAAEYWDVSGTFSLADKTAEDADKSFDARLVQFGGARVASG
RDFDDRGQLKPAAARDGVVQLDEQAASLVVGGLEGADFAVRSLETKPYTRRPAAPFTTST
LQQEASRKLRFNSRQTMRTAQALYENGYITYMRTDSPSLSAEATDAARRQAAELYGPEFV
PGSPRVYASKAKGAQEAHEAIRPAGDSFRTPAQVAREISGDQFKLYELIWKRTVASQMAD
AKGSTASVRLAAPIGLTAVAPLSGKTFVPDGPAPEAVFAASGTVISFRGFLAAYEEGTDD
GAETADGTPAKSGRRRNDEDARLPQMGEGDLLDGRDLTADGHSTSAPPRYTEASLIKALE
ERGIGRPSTYASTISTVQDRGYVLPRGQALVPSWLAFAVIRLLEEHFEWLIDYDFTAEME
ADLDAIAAGDKDRVAWLTRFYFGDGTGREEGEGLRQLVEDLGEIDARDINSVQIGEGIQL
RVGRYGPYVEDLSVPVKEGENPPRASVPDDLAPDELTVDKARELLAAGADDGRILGTDPE
SGNPVVARAGRYGPYVTEQLPEPKFDEGLSAAALKKAKAALPKPRTASLLKDMSLDTVTL
EDALRLLSLPRVVGTDPETGVEITAQNGRYGPYLKKGTDSRTLPSEEAMFTVTLEEALEL
YKQPKRGRGATATPPLRELGDDPTSGKPIVVKDGRFGAYVTDGETNRTLPRDLTPESITP
EKAIELLAEKRAAGPAKKKAPARKAPAKKPAAKKAPAKKAPAEKK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaggtcgcaagctcgtcatcgtggagtcccccacgaaggcacgcaagatccag
ggctacctcggtgacgacttcgaggtggagtcgagcgtcgggcacatccgcgacctcccg
cagccgtccgagctgcccgccgacatgaagaaggggccgttcggtaagttcgcggtcaac
gtcgacgagggcttcgagccctactacgaggtctacgcggacaagaagaagaaggtcgcg
gagctcaagcgcgccctgaagaacgccgacgagctctacctcgcgaccgacgaggaccgc
gagggcgaggccatcgcgtggcacctgctcgaggagctcaagcccaaggtccccgtacac
cgcatggtcttccacgagatcacgcgcgaggccatcgagcgtgcgctcgagaacacgcgc
gacctcgacgagcacctggtcgacgcccaggagacgcgccgcatcctcgaccgtctgtac
ggctacgaggtctcgccggtcctgtggcgcaaggtccgccaggggctgtccgcggggcgt
gtccagtcggtcgcgacgcgtctggtcgtcgagcgcgagcgcgagcgcatggccttcgtc
gccgccgagtactgggacgtgtccggcacgttctcgctcgccgacaagaccgccgaggac
gccgacaagagcttcgacgcccgactggtccagttcggcggcgcccgcgtcgcctcgggc
cgcgacttcgacgaccgtggacagctcaagcccgcggcggcgcgcgacggcgtggtccag
ctcgacgagcaggctgcgtcgctcgtcgtcggtgggctcgagggggccgacttcgcggtc
cgcagccttgagaccaagccgtacacgcgccgtccggccgcgccgttcacgacgtcgacg
ctccagcaggaggcgagccgcaagctccgcttcaactcgcggcagaccatgcgcaccgcg
caggcgctgtacgagaacggctacatcacctacatgcgtacggactccccgtcgctgtcg
gccgaggccacggacgccgcgcggcgccaggccgccgagctgtacgggcccgagttcgtg
cccggttcgccgcgcgtctacgcgtcgaaggcgaagggcgcgcaggaggcccacgaggcc
atccgtcccgccggcgactccttccgcaccccggcccaggtcgcgcgcgagatcagcggc
gaccagttcaagctgtacgagctcatctggaagcgcacggtcgcctcgcagatggcggac
gccaaggggtcgacggcgtcggtgcggctggctgcgccgatcggcctgaccgcggtggcg
ccgctctcgggcaagacgttcgtgccggacggcccggcgcccgaggccgtgttcgcggcc
tccggcacggtcatctcgttccgcggcttcctcgccgcgtacgaggaggggaccgacgac
ggcgcggagacggccgacgggacccccgcgaagtccggccgccgtcgcaacgacgaggac
gcccgcctgccccagatgggcgagggggacctgctcgacgggcgcgacctcacggccgac
gggcactcgacgtccgcacccccgcgctacaccgaggccagtctcatcaaggccctcgag
gagcgcggcatcggacgcccgtccacgtacgcgtcgaccatctcgacggtccaggaccgc
gggtacgtgctgccgcgcgggcaggccctcgtgccgagctggctcgcgttcgccgtgatc
cggctcctggaggagcacttcgagtggctcatcgactacgacttcaccgcggagatggag
gcggacctcgacgcgatcgcggccggcgacaaggaccgcgtcgcgtggttgacccggttc
tacttcggtgacggcacgggtcgtgaggagggcgaggggctgcgccagctcgtcgaggac
ctcggcgagatcgacgcgcgcgacatcaactcggtccagatcggcgagggcatccagctc
cgcgtcggtcggtacgggccgtacgtggaggatctgtccgtcccggtcaaggagggcgag
aacccgccgcgcgcctcggtgcccgacgacctggcccctgacgagctcacggtcgacaag
gcgcgcgagctcctcgccgcgggtgccgacgacggaaggatcctcggcaccgaccccgag
tcggggaaccccgtcgtggcccgcgcgggacgctacggcccgtacgtgaccgagcagctc
cccgagccgaagttcgacgagggcctgtcggccgcggcgctcaagaaggccaaggccgcg
ctgcccaagccccgtacggcgtccctgctcaaggacatgagcctcgacaccgtgacgctc
gaggacgcgctgcgtctgctgtcgctgccgcgcgtcgtgggcacggacccggagacgggc
gtcgagatcaccgcgcagaacggccggtacggtccgtacctcaagaagggcacggactcg
cgcaccctcccgtccgaggaggccatgttcacggtcaccctcgaggaggcgcttgagctg
tacaagcagcccaagcggggtcgtggagccacggccaccccgccgctgcgcgagctcggc
gacgacccgacgtcgggcaagcccatcgtggtcaaggacggccgcttcggcgcgtacgtc
acggacggcgagaccaaccggacgctgccgcgcgacctgacgcccgagtccatcacgccg
gagaaggccatcgagctcctcgcggagaagcgcgcggccggcccggcgaagaagaaggcc
ccggcccgcaaggccccggccaagaagcctgccgcgaagaaggccccggccaagaaggcg
cccgccgagaagaagtag
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