Oerskovia sp. KBS0722: FFI11_011780
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Entry
FFI11_011780 CDS
T06124
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFI11_011780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oek03019
]
FFI11_011780
03400 DNA repair and recombination proteins [BR:
oek03400
]
FFI11_011780
Enzymes [BR:
oek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFI11_011780
Messenger RNA biogenesis [BR:
oek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFI11_011780
DNA repair and recombination proteins [BR:
oek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FFI11_011780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
HEM4
Motif
Other DBs
NCBI-ProteinID:
QDW63111
LinkDB
All DBs
Position
complement(2625473..2627773)
Genome browser
AA seq
766 aa
AA seq
DB search
MLRGLLEGKDLREEAEAALRKLVGRDDAALRDDQWLAIEALVAFRRRALVVQRTGWGKSA
VYFVATSLLRSRGAGPTVIVSPLLALMRDQISAAARAGIRAVTINSSNMTEWDEVHAAIA
AGEVDVLLCSPERLNNPGFRDEVLPRLAADAGLVVIDEAHCISDWGHDFRPDYRRIRTLL
ADLPPGIPVLATTATANERVTADVAEQLGVTGASVGTGAPGTAAGAPGGPREDVLVLRGG
LDRESLHLAVLNLPDQPSRIAWLAETLQDVDGSGIVYCLTVSAAEQVASQLRATGLAVAA
YTGQTDTTEREQLEADLKENRVKALIATSALGMGFDKPDLAFVVHLGAPSSPIAYYQQVG
RAGRGVDSAVVVLLPGEEDRRIWEYFGSLAFPAERQVRETLAALEAGGGTQSVAALETQV
DLKRSRLETMLKVLDVDGAVRRVKGGWVSTGQPWVYDADRYARVEQTRLAEQRSMIDYEA
TTGCRMAFLRATLDDPELEHGWTCGRCDRCGGVDLPAAPDAEAVSAARADMDRPGVEVVA
RRQWPTGLDRMGLDLKGRLSPEELASPGRAVARLDGLGWSGPLRELFAPGVPDGETPVAL
RRAAARVLDEWDALYAAGTTADGADRAAEAAEGVAAADGAADETAPARRLLLDGVVSVRS
ATRPHLVQHLAGGLARYLDRPLVGSVGPVPGRDQPGRHDVNSAMRLAGVVERLKLELSGP
ALAGLAGRRILLVDDYTDSGWTLTVAARLLRQAGASAVYPFVLGVR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgggctcctcgagggcaaggacctccgcgaggaggccgaggccgcgctccgc
aagctcgtggggcgtgacgacgccgccctgcgcgacgaccagtggctcgcgatcgaggcc
ctggtcgcgttccgccgtcgggccctggtggtccagcgcaccgggtggggcaagtccgcg
gtctacttcgtcgcgacctcgctgctgcgctcgcgcggcgcgggcccgacggtcatcgtc
tcaccgctgctcgccctgatgcgcgaccagatctcggccgcagcccgtgccgggatccgc
gccgtgacgatcaactcctcgaacatgaccgagtgggacgaggtgcacgccgcgatcgcc
gcgggcgaggtcgacgtgctcctctgctcgcccgagcggctcaacaaccccggtttccgc
gacgaggtgctcccccggctcgcggccgacgcgggcctcgtcgtgatcgacgaggcgcac
tgcatctccgactggggccacgacttccggcccgactaccggcgtattcgcaccctgctc
gcggacctgcccccaggcatcccggtgctcgcgacgaccgcgaccgcgaacgagcgcgtc
accgcggacgtcgccgagcagctcggcgtcacgggagcgtcggtcggcacgggagccccg
ggcaccgccgccggtgcgcccgggggcccgcgcgaggacgtgctcgtgctgcgcggcggc
ctcgaccgcgagtcgctgcacctggccgtgctgaacctgccggaccagccgagccgcatc
gcgtggctcgcggagaccctccaggacgtcgacggctcggggatcgtctactgcctgacg
gtctcggccgccgagcaggtcgcgagccagctccgcgcgacgggcctcgccgtggccgcg
tacacaggacagaccgacacgaccgagcgcgagcagctcgaggccgacctcaaggagaac
cgcgtcaaggcgctcatcgcgacctcggcgctcggcatgggcttcgacaagccggacctc
gcgttcgtcgtgcacctcggcgcaccctcgtcccccatcgcgtactaccagcaggtgggt
cgggcggggcgcggcgtcgacagcgcggtcgtcgtgctgctgcccggcgaggaggaccgg
cgcatctgggagtacttcggctcgctcgccttccccgccgaacgtcaggtccgcgagacc
ctcgcggccctcgaggcgggcggtggcacgcagtcggtcgcagccctcgagacgcaggtc
gacctcaagcgctcgcgcctcgagaccatgctcaaggtcctcgacgtcgacggcgcggtg
cgccgcgtcaagggcggctgggtctcgaccgggcagccgtgggtctacgacgccgaccgg
tacgcgcgcgtcgagcagacccggctcgccgagcagcgctccatgatcgactacgaggcc
acgaccggctgccgcatggcgttcctgcgcgcgacgctcgacgaccccgagctcgagcac
ggctggacgtgcggacggtgcgaccgctgcggcggcgtcgacctgcccgcagcccccgac
gccgaggccgtctccgcggcgcgcgccgacatggaccgtccgggtgtcgaggtagtcgca
cgacgccagtggcccacaggcctcgaccgcatggggctcgacctcaagggccgcctgtcc
cccgaggagctcgcgtccccggggcgcgccgtcgcgcgcctcgacgggctggggtggtcg
gggccgctgcgtgagctcttcgcgcccggcgtgcccgacggcgagactcccgtcgcactg
cgccgtgcggccgcgcgcgtgctcgacgagtgggacgcactgtacgcggccgggaccact
gccgacggcgccgacagggcggctgaggcggccgagggcgtcgcggcggcggacggggcg
gccgacgagacggctcccgcacgcaggctcctgctcgacggcgtcgtgtccgtccggtcg
gccacgcgcccccacctcgtccagcacctcgcgggcgggctcgcgcgctacctcgaccga
ccgctcgtcgggtcggtcggtcccgtgccgggccgcgaccagcccggtcgccacgacgtg
aactcggccatgcggctggcgggggtcgtcgaacggctcaagctcgagctgtccgggccc
gcgctggccggtctcgcggggcgccggatcctcctggtcgacgactacaccgactcgggc
tggaccctcacggtcgctgcgcgcctgctgcgccaggcgggtgcctcagcggtctacccg
ttcgtgctcggggtgcgctga
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